RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 YBX1P67809 324 aaKnown RBP12.47□□□□□ -0.41
TPM1-220ENST00000559556 CRADDP78560 199 aa12.47□□□□□ -0.41
TPM1-220ENST00000559556 DSG2Q14126 1118 aa12.47□□□□□ -0.41
TPM1-220ENST00000559556 VWA2Q5GFL6 755 aa12.47□□□□□ -0.41
TPM1-220ENST00000559556 CTSL3PQ5NE16 218 aa12.47□□□□□ -0.41
TPM1-220ENST00000559556 CNSTQ6PJW8 725 aa12.47□□□□□ -0.41
TPM1-220ENST00000559556 NDUFAF7Q7L592 441 aa12.47□□□□□ -0.41
TPM1-220ENST00000559556 PRUNE1Q86TP1 453 aa12.47□□□□□ -0.41
TPM1-220ENST00000559556 CATSPER1Q8NEC5 780 aa12.47□□□□□ -0.41
TPM1-220ENST00000559556 OR1N1Q8NGS0 311 aa12.47□□□□□ -0.41
TPM1-220ENST00000559556 MAGEC3Q8TD91 643 aa12.47□□□□□ -0.41
TPM1-220ENST00000559556 SKA2Q8WVK7 121 aaPredicted RBP12.47□□□□□ -0.41
TPM1-220ENST00000559556 MARVELD3Q96A59 401 aa12.47□□□□□ -0.41
TPM1-220ENST00000559556 FOPNLQ96NB1 174 aa12.47□□□□□ -0.41
TPM1-220ENST00000559556 BIRC8Q96P09 236 aa12.47□□□□□ -0.41
TPM1-220ENST00000559556 DPH7Q9BTV6 452 aa12.47□□□□□ -0.41
TPM1-220ENST00000559556 IL22Q9GZX6 179 aa12.47□□□□□ -0.41
TPM1-220ENST00000559556 NSG1A0A0A6YYJ2 146 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 DYTNA2CJ06 578 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 IDSB3KWA1 339 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 PCDH17O14917 1159 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 PRPF4O43172 522 aaKnown RBP eCLIP12.46□□□□□ -0.413e-6■■□□□ 14.1
TPM1-220ENST00000559556 VPS26AO75436 327 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 NDUFS3O75489 264 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 JRKO75564 520 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 EIF2S1P05198 315 aaKnown RBP12.46□□□□□ -0.41
TPM1-220ENST00000559556 ARNTP27540 789 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 NMBRP28336 390 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 CMPK1P30085 196 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 EIF3BP55884 814 aaKnown RBP12.46□□□□□ -0.41
TPM1-220ENST00000559556 ARG2P78540 354 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 FASTKQ14296 549 aaKnown RBP12.46□□□□□ -0.41
TPM1-220ENST00000559556 TYSND1Q2T9J0 566 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 LAPTM4BQ86VI4 370 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 FJX1Q86VR8 437 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 SLC13A5Q86YT5 568 aaPredicted RBP12.46□□□□□ -0.41
TPM1-220ENST00000559556 PRSS58Q8IYP2 241 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 CCDC89Q8N998 374 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 BRIX1Q8TDN6 353 aaKnown RBP12.46□□□□□ -0.41
TPM1-220ENST00000559556 C1orf54Q8WWF1 131 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 NR4A3Q92570 626 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 LPGAT1Q92604 370 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 HAS2Q92819 552 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 CABS1Q96KC9 395 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 TAAR6Q96RI8 345 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 BAG1Q99933 345 aaPredicted RBP12.46□□□□□ -0.41
TPM1-220ENST00000559556 DESI2Q9BSY9 194 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 TGIF2Q9GZN2 237 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 SYNPO2LQ9H987 977 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 C14orf105Q9NVL8 296 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 CDC14AQ9UNH5 594 aa12.46□□□□□ -0.41
TPM1-220ENST00000559556 MRPS2Q9Y399 296 aaKnown RBP12.46□□□□□ -0.41
TPM1-220ENST00000559556 NF1P21359 2839 aa12.46□□□□□ -0.42
TPM1-220ENST00000559556 AKAP6Q13023 2319 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 IGHV1-45A0A0A0MS14 117 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 TRAV17A0A0B4J275 112 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 IGKV1-8A0A0C4DH67 115 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 H0YGG7 62 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 NIPSNAP2O75323 286 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 BMP10O95393 424 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 SERPINA7P05543 415 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 PRF1P14222 555 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 RPL22P35268 128 aaKnown RBP12.45□□□□□ -0.42
TPM1-220ENST00000559556 SLC26A3P40879 764 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 ADARP55265 1226 aaKnown RBP12.45□□□□□ -0.42
TPM1-220ENST00000559556 SESN2P58004 480 aaPredicted RBP12.45□□□□□ -0.42
TPM1-220ENST00000559556 ARF3P61204 181 aaPredicted RBP12.45□□□□□ -0.42
TPM1-220ENST00000559556 SNX1Q13596 522 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 ARHGAP19Q14CB8 494 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.45□□□□□ -0.42
TPM1-220ENST00000559556 RNF187Q5TA31 235 aaPredicted RBP12.45□□□□□ -0.42
TPM1-220ENST00000559556 GARNL3Q5VVW2 1013 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 FBXO42Q6P3S6 717 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 RIPOR1Q6ZS17 1223 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 PAQR7Q86WK9 346 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 ARHGEF39Q8N4T4 335 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 RNF10Q8N5U6 811 aaKnown RBP12.45□□□□□ -0.42
TPM1-220ENST00000559556 SIRT6Q8N6T7 355 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 AMER3Q8N944 861 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 OR9A1PQ8NGU1 263 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 RELTQ969Z4 430 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 PLCD4Q9BRC7 762 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 ACAT2Q9BWD1 397 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 RNF32Q9H0A6 362 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 MRPS30Q9NP92 439 aaKnown RBP12.45□□□□□ -0.42
TPM1-220ENST00000559556 MKKSQ9NPJ1 570 aaPredicted RBP12.45□□□□□ -0.42
TPM1-220ENST00000559556 RIC8BQ9NVN3 520 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 PTGFRNQ9P2B2 879 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 STOX2Q9P2F5 926 aaPredicted RBP12.45□□□□□ -0.42
TPM1-220ENST00000559556 TRPC4Q9UBN4 977 aa12.45□□□□□ -0.42
TPM1-220ENST00000559556 RUVBL1Q9Y265 456 aaKnown RBP12.45□□□□□ -0.42
TPM1-220ENST00000559556 LOC102723996A0A087X1L8 192 aa12.44□□□□□ -0.42
TPM1-220ENST00000559556 ARHGEF33A8MVX0 844 aa12.44□□□□□ -0.42
TPM1-220ENST00000559556 H3BMM5 538 aa12.44□□□□□ -0.42
TPM1-220ENST00000559556 MYO1CO00159 1063 aa12.44□□□□□ -0.42
TPM1-220ENST00000559556 AP3B1O00203 1094 aa12.44□□□□□ -0.42
TPM1-220ENST00000559556 PSIP1O75475 530 aaKnown RBP12.44□□□□□ -0.42
TPM1-220ENST00000559556 ESR1P03372 595 aa12.44□□□□□ -0.42
TPM1-220ENST00000559556 ZSCAN5DPP0CG00 497 aa12.44□□□□□ -0.42
TPM1-220ENST00000559556 EZRP15311 586 aaKnown RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms