RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 SNF8Q96H20 258 aa11.31□□□□□ -0.6
VRK1-204ENST00000555351 SPSB2Q99619 263 aa11.31□□□□□ -0.6
VRK1-204ENST00000555351 FAM129AQ9BZQ8 928 aa11.31□□□□□ -0.6
VRK1-204ENST00000555351 TRIM4Q9C037 500 aa11.31□□□□□ -0.6
VRK1-204ENST00000555351 PARVBQ9HBI1 364 aa11.31□□□□□ -0.6
VRK1-204ENST00000555351 ZNF304Q9HCX3 659 aa11.31□□□□□ -0.6
VRK1-204ENST00000555351 SLC6A20Q9NP91 592 aa11.31□□□□□ -0.6
VRK1-204ENST00000555351 SEMA3GQ9NS98 782 aa11.31□□□□□ -0.6
VRK1-204ENST00000555351 P4HTMQ9NXG6 502 aa11.31□□□□□ -0.6
VRK1-204ENST00000555351 ZC3H7BQ9UGR2 993 aaKnown RBP11.31□□□□□ -0.6
VRK1-204ENST00000555351 TEX264Q9Y6I9 313 aa11.31□□□□□ -0.6
VRK1-204ENST00000555351 NUP210LQ5VU65 1888 aa11.31□□□□□ -0.6
VRK1-204ENST00000555351 ASH1LQ9NR48 2969 aaKnown RBP11.31□□□□□ -0.6
VRK1-204ENST00000555351 KCNE1BA0A087WTH5 132 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 IGKV1-8A0A0C4DH67 115 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 A0A0J9YVX5 310 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 KRT87PA6NCN2 255 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 H0YGG7 62 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 MCM3P25205 808 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 GABRB3P28472 473 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 IMPA1P29218 277 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 CARSP49589 748 aaKnown RBP11.3□□□□□ -0.6
VRK1-204ENST00000555351 ARL4CP56559 192 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 ARF3P61204 181 aaPredicted RBP11.3□□□□□ -0.6
VRK1-204ENST00000555351 TIAL1Q01085 375 aaKnown RBP eCLIP11.3□□□□□ -0.6
VRK1-204ENST00000555351 CHAF1BQ13112 559 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 AIMP2Q13155 320 aaKnown RBP11.3□□□□□ -0.6
VRK1-204ENST00000555351 CUL1Q13616 776 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 BBS9Q3SYG4 887 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 TEDDM1Q5T9Z0 273 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 FAM69BQ5VUD6 431 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 SUSD1Q6UWL2 747 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 IGDCC3Q8IVU1 814 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 CPNE9Q8IYJ1 553 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 MYO1HQ8N1T3 1032 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 GALNT16Q8N428 558 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 BBOF1Q8ND07 529 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 EEF1AKMT1Q8WVE0 214 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 ANKRD7Q92527 254 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 PDLIM5Q96HC4 596 aaKnown RBP11.3□□□□□ -0.6
VRK1-204ENST00000555351 OR2A5Q96R48 311 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 NUDT9Q9BW91 350 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 ACAT2Q9BWD1 397 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 PLAC1Q9HBJ0 212 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 ATP13A2Q9NQ11 1180 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 CCDC177Q9NQR7 707 aaPredicted RBP11.3□□□□□ -0.6
VRK1-204ENST00000555351 TMEM184CQ9NVA4 438 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 TAC3Q9UHF0 121 aa11.3□□□□□ -0.6
VRK1-204ENST00000555351 PCSK5Q92824 1860 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 LOC105369274A0A096LPK9 316 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 LOC102723532A0A0G2JNH3 316 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 A0A1W2PQ72 361 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 E7ESA3 106 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 SORBS2O94875 1100 aaKnown RBP11.29□□□□□ -0.6
VRK1-204ENST00000555351 SYF2O95926 243 aaKnown RBP11.29□□□□□ -0.6
VRK1-204ENST00000555351 CYC1P08574 325 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 ENO2P09104 434 aaPredicted RBP11.29□□□□□ -0.6
VRK1-204ENST00000555351 ELK3P41970 407 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 AP1S2P56377 157 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 IL2P60568 153 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 OCA2Q04671 838 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 DSG2Q14126 1118 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 FAM53BQ14153 422 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 SLC9A5Q14940 896 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 FAM45BPQ6NSW5 357 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 PAQR3Q6TCH7 311 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 PIWIL4Q7Z3Z4 852 aaKnown RBP11.29□□□□□ -0.6
VRK1-204ENST00000555351 ATCAYQ86WG3 371 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 KLHL7Q8IXQ5 586 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 OR4N4Q8N0Y3 316 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 ARHGEF39Q8N4T4 335 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 CSNK1A1LQ8N752 337 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 FAM45AQ8TCE6 357 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 TM9SF4Q92544 642 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 RERGQ96A58 199 aaPredicted RBP11.29□□□□□ -0.6
VRK1-204ENST00000555351 PNPLA2Q96AD5 504 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 CAPZA3Q96KX2 299 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 C10orf90Q96M02 699 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 TGIF2Q9GZN2 237 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 C14orf105Q9NVL8 296 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 NSMCE4AQ9NXX6 385 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 STOX2Q9P2F5 926 aaPredicted RBP11.29□□□□□ -0.6
VRK1-204ENST00000555351 ZNF282Q9UDV7 671 aaPredicted RBP11.29□□□□□ -0.6
VRK1-204ENST00000555351 TSR3Q9UJK0 312 aaKnown RBP11.29□□□□□ -0.6
VRK1-204ENST00000555351 PDE10AQ9Y233 779 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 VWA7Q9Y334 891 aa11.29□□□□□ -0.6
VRK1-204ENST00000555351 CLEC18AA5D8T8 446 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 EFCAB8A8MWE9 144 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 SOCS6O14544 535 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 TP73O15350 636 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 TTI1O43156 1089 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 TSPAN12O95859 305 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 HIST1H2AGP0C0S8 130 aaPredicted RBP11.28□□□□□ -0.6
VRK1-204ENST00000555351 HIST1H2ADP20671 130 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 FDXRP22570 491 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 SLC26A3P40879 764 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 OR1D4P47884 311 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 ITGA8P53708 1063 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 CDKN2DP55273 166 aa11.28□□□□□ -0.6
VRK1-204ENST00000555351 RPS15AP62244 130 aaKnown RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms