RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 GNPTGQ9UJJ9 305 aa8.09□□□□□ -1.11
USP28-215ENST00000545608 DRG1Q9Y295 367 aaKnown RBP8.09□□□□□ -1.11
USP28-215ENST00000545608 COL12A1Q99715 3063 aa8.09□□□□□ -1.12
USP28-215ENST00000545608 SNRNP200O75643 2136 aaKnown RBP8.08□□□□□ -1.12
USP28-215ENST00000545608 HIVEP3Q5T1R4 2406 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 TCRBV7S3A2A0A539 114 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 HYKKA2RU49 373 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 GOLGA8KD6RF30 607 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 GOLGA8TH3BQL2 631 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 KPNA5O15131 536 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 NIPSNAP2O75323 286 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 VAPBO95292 243 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 FKBP9O95302 570 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 FMO4P31512 558 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 KCNJ1P48048 391 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 BASP1P80723 227 aaKnown RBP8.08□□□□□ -1.12
USP28-215ENST00000545608 Q0VFX4 171 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 GBX1Q14549 363 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 RPS6KA1Q15418 735 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 RBBP7Q16576 425 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 FAM214AQ32MH5 1076 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 MEI1Q5TIA1 1274 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 ZNF787Q6DD87 383 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 DRICH1Q6PGQ1 229 aaPredicted RBP8.08□□□□□ -1.12
USP28-215ENST00000545608 CNSTQ6PJW8 725 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 OTOAQ7RTW8 1153 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 KCNMB4Q86W47 210 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 LRRC6Q86X45 466 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 PRSS58Q8IYP2 241 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 MPP5Q8N3R9 675 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 OR11G2Q8NGC1 345 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 GSDMBQ8TAX9 411 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 DNAJB14Q8TBM8 379 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 STT3BQ8TCJ2 826 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 PPP4R1Q8TF05 950 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 SKA2Q8WVK7 121 aaPredicted RBP8.08□□□□□ -1.12
USP28-215ENST00000545608 LPGAT1Q92604 370 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 FAM136AQ96C01 138 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 BIRC8Q96P09 236 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 WDR77Q9BQA1 342 aaPredicted RBP8.08□□□□□ -1.12
USP28-215ENST00000545608 KIFC1Q9BW19 673 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 ACAT2Q9BWD1 397 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 RAB11FIP5Q9BXF6 653 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 IL22Q9GZX6 179 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 SYNPO2LQ9H987 977 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 MRM3Q9HC36 420 aaKnown RBP8.08□□□□□ -1.12
USP28-215ENST00000545608 EIF2B3Q9NR50 452 aaKnown RBP8.08□□□□□ -1.12
USP28-215ENST00000545608 SEMA3GQ9NS98 782 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 SYBUQ9NX95 663 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 IL1RAPL1Q9NZN1 696 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 BFARQ9NZS9 450 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 SLC5A6Q9Y289 635 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 KLK4Q9Y5K2 254 aa8.08□□□□□ -1.12
USP28-215ENST00000545608 ANKRD12Q6UB98 2062 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 OR2A25A4D2G3 310 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 KLHL18O94889 574 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 MATN4O95460 622 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 EIF2S1P05198 315 aaKnown RBP8.07□□□□□ -1.12
USP28-215ENST00000545608 CDC25BP30305 580 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 CCNFP41002 786 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 KLC1Q07866 573 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 TYSND1Q2T9J0 566 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 TSNAXIP1Q2TAA8 658 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 PRTGQ2VWP7 1150 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 TUBB8Q3ZCM7 444 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 ACSBG2Q5FVE4 666 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 VWA2Q5GFL6 755 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 EEF1AKMT2Q5JPI9 291 aaKnown RBP8.07□□□□□ -1.12
USP28-215ENST00000545608 AGAP7PQ5VUJ5 663 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 LRRC8BQ6P9F7 803 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 SUSD1Q6UWL2 747 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 LINC00696Q6ZRV3 163 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 RNF44Q7L0R7 432 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 MAMDC2Q7Z304 686 aaPredicted RBP8.07□□□□□ -1.12
USP28-215ENST00000545608 SDCCAG8Q86SQ7 713 aaPredicted RBP8.07□□□□□ -1.12
USP28-215ENST00000545608 TREML1Q86YW5 311 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 RAB42Q8N4Z0 105 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 OTUD6BQ8N6M0 293 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 AMER2Q8N7J2 671 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 CATSPER1Q8NEC5 780 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 OR9A1PQ8NGU1 263 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 MIEF2Q96C03 454 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 C8orf44Q96CB5 159 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 THOC3Q96J01 351 aaKnown RBP8.07□□□□□ -1.12
USP28-215ENST00000545608 C10orf90Q96M02 699 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 C5orf34Q96MH7 638 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 FOPNLQ96NB1 174 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 AGAP4Q96P64 663 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 DPH7Q9BTV6 452 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 CRB3Q9BUF7 120 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 TSGA10Q9BZW7 698 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 LHPPQ9H008 270 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 ZNF304Q9HCX3 659 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 SPATA7Q9P0W8 599 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 NXT1Q9UKK6 140 aaKnown RBP8.07□□□□□ -1.12
USP28-215ENST00000545608 CRYL1Q9Y2S2 319 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 MRFAP1Q9Y605 127 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 GPC6Q9Y625 555 aaPredicted RBP8.07□□□□□ -1.12
USP28-215ENST00000545608 FAM169AQ9Y6X4 670 aa8.07□□□□□ -1.12
USP28-215ENST00000545608 IGLV3-12A0A075B6K2 115 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms