RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 SLC8B1Q6J4K2 584 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 DPY19L3Q6ZPD9 716 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 ADCK1Q86TW2 530 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 OR2T29Q8NH02 315 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 USP7Q93009 1102 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 CCDC115Q96NT0 180 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 C2orf49Q9BVC5 232 aaPredicted RBP14.59□□□□□ -0.07
USP28-214ENST00000545540 TAS2R16Q9NYV7 291 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 ENPP5Q9UJA9 477 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 EVPLLA8MZ36 301 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 RECQL5O94762 991 aaPredicted RBP14.59□□□□□ -0.07
USP28-214ENST00000545540 CRISP3P54108 245 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 CLDN8P56748 225 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 IRF8Q02556 426 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 CDKN3Q16667 212 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 UGT8Q16880 541 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 INO80DQ53TQ3 878 aaPredicted RBP14.59□□□□□ -0.07
USP28-214ENST00000545540 RETSATQ6NUM9 610 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 ZNF852Q6ZMS4 543 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 OR5AK3PQ8NH89 298 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 PSMA8Q8TAA3 256 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 SPPL2AQ8TCT8 520 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 TUBA1CQ9BQE3 449 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 NTMT1Q9BV86 223 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 YTHDF1Q9BYJ9 559 aaKnown RBP14.59□□□□□ -0.07
USP28-214ENST00000545540 KIAA1522Q9P206 1035 aaPredicted RBP14.59□□□□□ -0.07
USP28-214ENST00000545540 ACSL6Q9UKU0 697 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 BLOC1S6Q9UL45 172 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 LOC100506127A0A0U1RQW1 187 aa14.58□□□□□ -0.08
USP28-214ENST00000545540 A0A1W2PRU2 124 aa14.58□□□□□ -0.08
USP28-214ENST00000545540 KRBA1A5PL33 1030 aa14.58□□□□□ -0.08
USP28-214ENST00000545540 E7EQ34 232 aa14.58□□□□□ -0.08
USP28-214ENST00000545540 AOAHP28039 575 aa14.58□□□□□ -0.08
USP28-214ENST00000545540 EIF2B2P49770 351 aaKnown RBP14.58□□□□□ -0.08
USP28-214ENST00000545540 SPATS1Q496A3 300 aa14.58□□□□□ -0.08
USP28-214ENST00000545540 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.58□□□□□ -0.08
USP28-214ENST00000545540 Q6ZVL8 140 aa14.58□□□□□ -0.08
USP28-214ENST00000545540 PJA1Q8NG27 643 aa14.58□□□□□ -0.08
USP28-214ENST00000545540 HTRA1Q92743 480 aa14.58□□□□□ -0.08
USP28-214ENST00000545540 ATP13A3Q9H7F0 1226 aa14.58□□□□□ -0.08
USP28-214ENST00000545540 ZBTB20Q9HC78 741 aaPredicted RBP14.58□□□□□ -0.08
USP28-214ENST00000545540 KRT84Q9NSB2 600 aa14.58□□□□□ -0.08
USP28-214ENST00000545540 RLIMQ9NVW2 624 aa14.58□□□□□ -0.08
USP28-214ENST00000545540 CCL26Q9Y258 94 aa14.58□□□□□ -0.08
USP28-214ENST00000545540 CCDC88CQ9P219 2028 aa14.58□□□□□ -0.08
USP28-214ENST00000545540 DYTNA2CJ06 578 aa14.58□□□□□ -0.08
USP28-214ENST00000545540 PCDHGA12O60330 932 aa14.58□□□□□ -0.08
USP28-214ENST00000545540 SULT1C4O75897 302 aa14.58□□□□□ -0.08
USP28-214ENST00000545540 KCNK5O95279 499 aa14.58□□□□□ -0.08
USP28-214ENST00000545540 HSMCR30P0CW71 290 aa14.58□□□□□ -0.08
USP28-214ENST00000545540 JUNBP17275 347 aaPredicted RBP14.58□□□□□ -0.08
USP28-214ENST00000545540 HOXA9P31269 272 aa14.58□□□□□ -0.08
USP28-214ENST00000545540 KRT20P35900 424 aa14.58□□□□□ -0.08
USP28-214ENST00000545540 MAD2L1Q13257 205 aaPredicted RBP14.58□□□□□ -0.08
USP28-214ENST00000545540 NAE1Q13564 534 aa14.58□□□□□ -0.08
USP28-214ENST00000545540 CBX2Q14781 532 aaPredicted RBP14.58□□□□□ -0.08
USP28-214ENST00000545540 SH3GL1Q99961 368 aa14.58□□□□□ -0.08
USP28-214ENST00000545540 KCNH6Q9H252 994 aa14.58□□□□□ -0.08
USP28-214ENST00000545540 RHCGQ9UBD6 479 aa14.58□□□□□ -0.08
USP28-214ENST00000545540 BMP4P12644 408 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 MADCAM1Q13477 382 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 CLCA4Q14CN2 919 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 SVOPLQ8N434 492 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 CWH43Q9H720 699 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 GPN2Q9H9Y4 310 aaPredicted RBP14.57□□□□□ -0.08
USP28-214ENST00000545540 C8orf4Q9NR00 106 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 ABCB10Q9NRK6 738 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 TMEM9Q9P0T7 183 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 B4GALT6Q9UBX8 382 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 PABPN1LA6NDY0 278 aaKnown RBP14.57□□□□□ -0.08
USP28-214ENST00000545540 CLDN25C9JDP6 229 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 UGT2B11O75310 529 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 DNTTP04053 509 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 MRPL19P49406 292 aaKnown RBP14.57□□□□□ -0.08
USP28-214ENST00000545540 RPP38P78345 283 aaKnown RBP14.57□□□□□ -0.08
USP28-214ENST00000545540 MC1RQ01726 317 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 FRG2Q64ET8 278 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 CLIP4Q8N3C7 705 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 HJURPQ8NCD3 748 aaPredicted RBP14.57□□□□□ -0.08
USP28-214ENST00000545540 TRUB1Q8WWH5 349 aaKnown RBP14.57□□□□□ -0.08
USP28-214ENST00000545540 FRG2BQ96QU4 278 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 HTATIP2Q9BUP3 242 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 KNL1Q8NG31 2342 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 CBFA2T3O75081 653 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 ERN1O75460 977 aaKnown RBP14.57□□□□□ -0.08
USP28-214ENST00000545540 KDELR2P33947 212 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 NSG1P42857 185 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 BDKRB1P46663 353 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 VEPH1Q14D04 833 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 TTLL9Q3SXZ7 439 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 GAREM2Q75VX8 874 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 CALHM3Q86XJ0 350 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 GLB1L3Q8NCI6 653 aaPredicted RBP14.57□□□□□ -0.08
USP28-214ENST00000545540 ITFG2Q969R8 447 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 ZNF641Q96N77 438 aaPredicted RBP14.57□□□□□ -0.08
USP28-214ENST00000545540 ALPK1Q96QP1 1244 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 RMND5AQ9H871 391 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 THUMPD1Q9NXG2 353 aaKnown RBP14.57□□□□□ -0.08
USP28-214ENST00000545540 TRPS1Q9UHF7 1281 aa14.57□□□□□ -0.08
USP28-214ENST00000545540 CAB39Q9Y376 341 aaPredicted RBP14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms