RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 PCDHB9Q9Y5E1 797 aa13.88□□□□□ -0.19
LIMS1-215ENST00000544547 IGSF6O95976 241 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 OR4D1Q15615 310 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 UAP1L1Q3KQV9 507 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 CXorf57Q6NSI4 855 aaKnown RBP13.87□□□□□ -0.19
LIMS1-215ENST00000544547 OR6C4Q8NGE1 309 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 PTERQ96BW5 349 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 PCDHGB3Q9Y5G1 929 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 TRAV6A0A075B6T7 132 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 M0R129 80 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 TRBC1P01850 177 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 ITGA2P17301 1181 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 ZNF81P51508 661 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 CLCNKBP51801 687 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 CSTF1Q05048 431 aaKnown RBP13.87□□□□□ -0.19
LIMS1-215ENST00000544547 HNRNPA0Q13151 305 aaKnown RBP13.87□□□□□ -0.19
LIMS1-215ENST00000544547 PLD1Q13393 1074 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 TPGS1Q6ZTW0 290 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 IZUMO1Q8IYV9 350 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 OR6K2Q8NGY2 324 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 PIGKQ92643 395 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 GTF2H4Q92759 462 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 ATG10Q9H0Y0 220 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 SMURF1Q9HCE7 757 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 RAD18Q9NS91 495 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 TMEM39AQ9NV64 488 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 TVP23BQ9NYZ1 205 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 ANKDD1BA6NHY2 528 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 MAGEB17A8MXT2 336 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 ISM1B1AKI9 464 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 SLC30A4O14863 429 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 HPGDP15428 266 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 ENGP17813 658 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 OR1E2P47887 323 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 NPRL3Q12980 569 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 SELPLGQ14242 412 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 LRIT3Q3SXY7 679 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 ASB12Q8WXK4 309 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 ZFP3Q96NJ6 502 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 DPP7Q9UHL4 492 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 MAP4K5Q9Y4K4 846 aa13.87□□□□□ -0.19
LIMS1-215ENST00000544547 SDK1Q7Z5N4 2213 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 UPK3BL1B0FP48 263 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 UPK3BL2E5RIL1 263 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 ADAMDEC1O15204 470 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 STK16O75716 305 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 SLC25A14O95258 325 aaPredicted RBP13.86□□□□□ -0.19
LIMS1-215ENST00000544547 CD1DP15813 335 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 HTR6P50406 440 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 BEND5Q7L4P6 421 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 VAPAQ9P0L0 249 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 FAM92AA1XBS5 289 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 DCLK1O15075 740 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 APOL3O95236 402 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 ERP29P30040 261 aaKnown RBP13.86□□□□□ -0.19
LIMS1-215ENST00000544547 PPP2R1BP30154 601 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 ARHGAP1Q07960 439 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 FBXO43Q4G163 708 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 SIRPB2Q5JXA9 342 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 C10orf62Q5T681 223 aaPredicted RBP13.86□□□□□ -0.19
LIMS1-215ENST00000544547 OSTM1Q86WC4 334 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 PYCR2Q96C36 320 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 AHSPQ9NZD4 102 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 GRIP1Q9Y3R0 1128 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 SOX14O95416 240 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 OR56A5P0C7T3 313 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 GGT1P19440 569 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 CATSPEREQ5SY80 951 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 ZNF613Q6PF04 617 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 USP45Q70EL2 814 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 C2orf49Q9BVC5 232 aaPredicted RBP13.86□□□□□ -0.19
LIMS1-215ENST00000544547 ZCCHC2Q9C0B9 1178 aaKnown RBP13.86□□□□□ -0.19
LIMS1-215ENST00000544547 MFSD1Q9H3U5 465 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 CTPS2Q9NRF8 586 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 DNAJC27Q9NZQ0 273 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 PIM1P11309 404 aaPredicted RBP13.86□□□□□ -0.19
LIMS1-215ENST00000544547 UGT2B15P54855 530 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 CCDC157Q569K6 752 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 MTSS1LQ765P7 747 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 TOP6BLQ8N6T0 577 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 TP53INP1Q96A56 240 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 CDKN2AIPNLQ96HQ2 116 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 TXNDC15Q96J42 360 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 DPCDQ9BVM2 203 aaPredicted RBP13.86□□□□□ -0.19
LIMS1-215ENST00000544547 R3HDMLQ9H3Y0 253 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 ACOT13Q9NPJ3 140 aa13.86□□□□□ -0.19
LIMS1-215ENST00000544547 NFKBIL1Q9UBC1 381 aaPredicted RBP13.86□□□□□ -0.19
LIMS1-215ENST00000544547 TRAV19A0A0A6YYK7 116 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 INMT-MINDY4F8WBC2 141 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 CCNB2O95067 398 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 MMP3P08254 477 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 PRSS56P0CW18 603 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 PFKLP17858 780 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 WARSP23381 471 aaKnown RBP13.85□□□□□ -0.19
LIMS1-215ENST00000544547 PRKAG1P54619 331 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 ZMYND11Q15326 602 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 PRSS48Q7RTY5 328 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 B3GNT8Q7Z7M8 397 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 CRYBG2Q8N1P7 616 aa13.85□□□□□ -0.19
LIMS1-215ENST00000544547 C11orf65Q8NCR3 313 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms