RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 LPAR1Q92633 364 aa9.21□□□□□ -0.94
CLIP1-214ENST00000540539 ERVK-6Q9BXR3 956 aa9.21□□□□□ -0.94
CLIP1-214ENST00000540539 RHBGQ9H310 441 aa9.21□□□□□ -0.94
CLIP1-214ENST00000540539 SPHK1Q9NYA1 384 aa9.21□□□□□ -0.94
CLIP1-214ENST00000540539 VAV3Q9UKW4 847 aa9.21□□□□□ -0.94
CLIP1-214ENST00000540539 ING4Q9UNL4 249 aa9.21□□□□□ -0.94
CLIP1-214ENST00000540539 MAB21L2Q9Y586 359 aa9.21□□□□□ -0.94
CLIP1-214ENST00000540539 PCDHB14Q9Y5E9 798 aa9.21□□□□□ -0.94
CLIP1-214ENST00000540539 PCDHA11Q9Y5I1 949 aa9.21□□□□□ -0.94
CLIP1-214ENST00000540539 RBBP6Q7Z6E9 1792 aaKnown RBP9.21□□□□□ -0.94
CLIP1-214ENST00000540539 POM121BA6NF01 834 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 G3V2T6 193 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 PPP6CO00743 305 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 SCAMP3O14828 347 aaKnown RBP9.2□□□□□ -0.94
CLIP1-214ENST00000540539 BCKDKO14874 412 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 UBDO15205 165 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 CHMP2AO43633 222 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 APOC3P02656 99 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 S100A9P06702 114 aaKnown RBP9.2□□□□□ -0.94
CLIP1-214ENST00000540539 CFHP08603 1231 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 SERPINF2P08697 491 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 CSF3P09919 207 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 TPH1P17752 444 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 ACO1P21399 889 aaKnown RBP9.2□□□□□ -0.94
CLIP1-214ENST00000540539 VAMP1P23763 118 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 SLC6A2P23975 617 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 PPP3CCP48454 512 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 LIMK1P53667 647 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 HUNKP57058 714 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 IRF9Q00978 393 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 PUM1Q14671 1186 aaKnown RBP eCLIP9.2□□□□□ -0.94
CLIP1-214ENST00000540539 RBMS2Q15434 407 aaKnown RBP9.2□□□□□ -0.94
CLIP1-214ENST00000540539 SMN1Q16637 294 aaKnown RBP9.2□□□□□ -0.94
CLIP1-214ENST00000540539 C9orf152Q5JTZ5 239 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 BHLHB9Q6PI77 547 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 TMPRSS11AQ6ZMR5 421 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 OTOP1Q7RTM1 612 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 SLC44A2Q8IWA5 706 aaPredicted RBP9.2□□□□□ -0.94
CLIP1-214ENST00000540539 GHDCQ8N2G8 530 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 TMEM132CQ8N3T6 1108 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 OXR1Q8N573 874 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 CA5BP1Q8WTZ4 195 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 CLEC4DQ8WXI8 215 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 CXorf58Q96LI9 332 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 PIGSQ96S52 555 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 TREX2Q9BQ50 279 aaPredicted RBP9.2□□□□□ -0.94
CLIP1-214ENST00000540539 CPEB1Q9BZB8 566 aaKnown RBP9.2□□□□□ -0.94
CLIP1-214ENST00000540539 PIGUQ9H490 435 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 CDCP1Q9H5V8 836 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 CARS2Q9HA77 564 aaKnown RBP9.2□□□□□ -0.94
CLIP1-214ENST00000540539 EQTNQ9NQ60 294 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 SMPD4Q9NXE4 827 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 SCN3BQ9NY72 215 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 CLCA3PQ9Y6N3 262 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 TUBAL3A6NHL2 446 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 SLC28A1O00337 649 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 PRPSAP2O60256 369 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 ADH1CP00326 375 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 F9P00740 461 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 LTA4HP09960 611 aaKnown RBP9.2□□□□□ -0.94
CLIP1-214ENST00000540539 SPATA31C1P0DKV0 1188 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 RAB3BP20337 219 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 FPR3P25089 353 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 MAGEA3P43357 314 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 GSK3BP49841 420 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 PSMD4P55036 377 aaKnown RBP9.2□□□□□ -0.94
CLIP1-214ENST00000540539 NOMO3P69849 1222 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 OGDHQ02218 1023 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 SLC3A1Q07837 685 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 NOMO1Q15155 1222 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 SEC23BQ15437 767 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 TMEM44Q2T9K0 475 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.2□□□□□ -0.94
CLIP1-214ENST00000540539 EIF2S3LQ2VIR3 472 aaKnown RBP9.2□□□□□ -0.94
CLIP1-214ENST00000540539 KLHL26Q53HC5 615 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 LIPMQ5VYY2 423 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 ZNF470Q6ECI4 717 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 CNSTQ6PJW8 725 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 ZNF534Q76KX8 674 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 SLC46A3Q7Z3Q1 461 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 ADGRD2Q7Z7M1 963 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 FUNDC1Q8IVP5 155 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 LAX1Q8IWV1 398 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 CARFQ8N187 725 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 SPPL2BQ8TCT7 592 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 UPRTQ96BW1 309 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 HOPXQ9BPY8 73 aaPredicted RBP9.2□□□□□ -0.94
CLIP1-214ENST00000540539 CHCHD6Q9BRQ6 235 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 IL22Q9GZX6 179 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 MYEF2Q9P2K5 600 aaKnown RBP9.2□□□□□ -0.94
CLIP1-214ENST00000540539 FBXL2Q9UKC9 423 aa9.2□□□□□ -0.94
CLIP1-214ENST00000540539 DNMT3AQ9Y6K1 912 aaPredicted RBP9.2□□□□□ -0.94
CLIP1-214ENST00000540539 A0A075B6Q4 140 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 TISP43B9A030 160 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 GPX5O75715 221 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 HRGP04196 525 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 ERVK-10P10266 1014 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 NDUFB7P17568 137 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 GJA5P36382 358 aa9.19□□□□□ -0.94
CLIP1-214ENST00000540539 RAC1P63000 192 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms