RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 PIWIL3Q7Z3Z3 882 aaKnown RBP16.38■□□□□ 0.21
USP28-208ENST00000540438 ZDHHC21Q8IVQ6 265 aa16.38■□□□□ 0.21
USP28-208ENST00000540438 ECHDC3Q96DC8 303 aa16.38■□□□□ 0.21
USP28-208ENST00000540438 HEPHQ9BQS7 1158 aa16.38■□□□□ 0.21
USP28-208ENST00000540438 THG1LQ9NWX6 298 aaKnown RBP16.38■□□□□ 0.21
USP28-208ENST00000540438 BRWD1Q9NSI6 2320 aa16.38■□□□□ 0.21
USP28-208ENST00000540438 FCGR1AP12314 374 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 POU2F1P14859 743 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 AMD1P17707 334 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 TGFBR1P36897 503 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 ALDH3A2P51648 485 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 RPS13P62277 151 aaKnown RBP16.37■□□□□ 0.21
USP28-208ENST00000540438 ADARB1P78563 741 aaKnown RBP16.37■□□□□ 0.21
USP28-208ENST00000540438 VLDLRP98155 873 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 CD47Q08722 323 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 ACSM2AQ08AH3 577 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 TMEM115Q12893 351 aaPredicted RBP16.37■□□□□ 0.21
USP28-208ENST00000540438 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.37■□□□□ 0.21
USP28-208ENST00000540438 ACSM2BQ68CK6 577 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 LMLNQ96KR4 655 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 MBOAT4Q96T53 435 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 TRIM39Q9HCM9 518 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 FAM118AQ9NWS6 357 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 TANC1Q9C0D5 1861 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 VPS13AQ96RL7 3174 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 RTCAO00442 366 aaKnown RBP16.37■□□□□ 0.21
USP28-208ENST00000540438 ATXN8OSP0DMR3 200 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 CYP2A7P20853 494 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 DCTP40126 519 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 MAP2K4P45985 399 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 GRIK2Q13002 908 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 PARS2Q7L3T8 475 aaKnown RBP16.37■□□□□ 0.21
USP28-208ENST00000540438 ZNF784Q8NCA9 323 aaPredicted RBP16.37■□□□□ 0.21
USP28-208ENST00000540438 B4GALNT2Q8NHY0 566 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 SNX19Q92543 992 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 CIDECQ96AQ7 238 aaPredicted RBP16.37■□□□□ 0.21
USP28-208ENST00000540438 RSPRY1Q96DX4 576 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 OTUB1Q96FW1 271 aaPredicted RBP16.37■□□□□ 0.21
USP28-208ENST00000540438 CCDC138Q96M89 665 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 PKP4Q99569 1192 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 LHPPQ9H008 270 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 AASDHPPTQ9NRN7 309 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 NDUFA13Q9P0J0 144 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 TRPS1Q9UHF7 1281 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 ABHD14A-ACY1A0A1B0GW23 586 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 PRRT4C9JH25 899 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 H3BMQ9 156 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 PSMD7P51665 324 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 DYNC1I2Q13409 638 aaKnown RBP16.37■□□□□ 0.21
USP28-208ENST00000540438 RAPSNQ13702 412 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 CYP4Z1Q86W10 505 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 PLD3Q8IV08 490 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 VN1R2Q8NFZ6 395 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 TSPEARQ8WU66 669 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 COG8Q96MW5 612 aa16.37■□□□□ 0.21
USP28-208ENST00000540438 CKAP5Q14008 2032 aa16.36■□□□□ 0.21
USP28-208ENST00000540438 WASHC1A8K0Z3 465 aa16.36■□□□□ 0.21
USP28-208ENST00000540438 AGRPO00253 132 aa16.36■□□□□ 0.21
USP28-208ENST00000540438 SLC19A1P41440 591 aa16.36■□□□□ 0.21
USP28-208ENST00000540438 CSNK1DP48730 415 aa16.36■□□□□ 0.21
USP28-208ENST00000540438 CDK9P50750 372 aaKnown RBP16.36■□□□□ 0.21
USP28-208ENST00000540438 WASH2PQ6VEQ5 465 aa16.36■□□□□ 0.21
USP28-208ENST00000540438 TMEM132CQ8N3T6 1108 aa16.36■□□□□ 0.21
USP28-208ENST00000540438 THAP11Q96EK4 314 aa16.36■□□□□ 0.21
USP28-208ENST00000540438 CPPED1Q9BRF8 314 aaPredicted RBP16.36■□□□□ 0.21
USP28-208ENST00000540438 FAF1Q9UNN5 650 aaPredicted RBP16.36■□□□□ 0.21
USP28-208ENST00000540438 INMTO95050 263 aa16.36■□□□□ 0.21
USP28-208ENST00000540438 ANXA4P09525 319 aaPredicted RBP16.36■□□□□ 0.21
USP28-208ENST00000540438 CD9P21926 228 aa16.36■□□□□ 0.21
USP28-208ENST00000540438 CLDN8P56748 225 aa16.36■□□□□ 0.21
USP28-208ENST00000540438 NFE2L1Q14494 772 aa16.36■□□□□ 0.21
USP28-208ENST00000540438 RAET1GQ6H3X3 334 aa16.36■□□□□ 0.21
USP28-208ENST00000540438 FAM217AQ8IXS0 508 aa16.36■□□□□ 0.21
USP28-208ENST00000540438 OR8J3Q8NGG0 315 aa16.36■□□□□ 0.21
USP28-208ENST00000540438 HUS1BQ8NHY5 278 aa16.36■□□□□ 0.21
USP28-208ENST00000540438 ASZ1Q8WWH4 475 aa16.36■□□□□ 0.21
USP28-208ENST00000540438 GAB3Q8WWW8 586 aa16.36■□□□□ 0.21
USP28-208ENST00000540438 MACROD1Q9BQ69 325 aa16.36■□□□□ 0.21
USP28-208ENST00000540438 UGT2B28Q9BY64 529 aa16.36■□□□□ 0.21
USP28-208ENST00000540438 STOX2Q9P2F5 926 aaPredicted RBP16.36■□□□□ 0.21
USP28-208ENST00000540438 GULP1Q9UBP9 304 aa16.36■□□□□ 0.21
USP28-208ENST00000540438 KCNE1BA0A087WTH5 132 aa16.35■□□□□ 0.21
USP28-208ENST00000540438 GABRR3A8MPY1 467 aa16.35■□□□□ 0.21
USP28-208ENST00000540438 PTPN6P29350 595 aa16.35■□□□□ 0.21
USP28-208ENST00000540438 MASP1P48740 699 aa16.35■□□□□ 0.21
USP28-208ENST00000540438 RPS26P62854 115 aaKnown RBP16.35■□□□□ 0.21
USP28-208ENST00000540438 ZNF284Q2VY69 593 aa16.35■□□□□ 0.21
USP28-208ENST00000540438 COX20Q5RI15 118 aa16.35■□□□□ 0.21
USP28-208ENST00000540438 LAIR1Q6GTX8 287 aa16.35■□□□□ 0.21
USP28-208ENST00000540438 OLIG3Q7RTU3 272 aa16.35■□□□□ 0.21
USP28-208ENST00000540438 CPXM2Q8N436 756 aa16.35■□□□□ 0.21
USP28-208ENST00000540438 MCCC1Q96RQ3 725 aaPredicted RBP16.35■□□□□ 0.21
USP28-208ENST00000540438 PAK1IP1Q9NWT1 392 aaPredicted RBP16.35■□□□□ 0.21
USP28-208ENST00000540438 UMPSP11172 480 aa16.35■□□□□ 0.21
USP28-208ENST00000540438 NNMTP40261 264 aa16.35■□□□□ 0.21
USP28-208ENST00000540438 CRATP43155 626 aa16.35■□□□□ 0.21
USP28-208ENST00000540438 MAPK8P45983 427 aa16.35■□□□□ 0.21
USP28-208ENST00000540438 GAB1Q13480 694 aa16.35■□□□□ 0.21
USP28-208ENST00000540438 MMAAQ8IVH4 418 aaKnown RBP16.35■□□□□ 0.21
USP28-208ENST00000540438 C8orf59Q8N0T1 100 aaPredicted RBP16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms