RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 ZNF558Q96NG5 402 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 KCNS3Q9BQ31 491 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 MFSD1Q9H3U5 465 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 GLTPQ9NZD2 209 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 FAM50BQ9Y247 325 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 TPRKBQ9Y3C4 175 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 PCDHA9Q9Y5H5 950 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 BACE2Q9Y5Z0 518 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 A0A087X1B8 175 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 CAPN5O15484 640 aaPredicted RBP13.6□□□□□ -0.23
LIG1-203ENST00000536218 TBL1XO60907 577 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 SERPINI2O75830 405 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 TP53P04637 393 aaPredicted RBP13.6□□□□□ -0.23
LIG1-203ENST00000536218 FGF1P05230 155 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 HLA-DPA1P20036 260 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 HRH2P25021 359 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 SLC26A3P40879 764 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 PRMT2P55345 433 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 NECAB2Q7Z6G3 386 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 BPIFB1Q8TDL5 484 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 SLC7A6Q92536 515 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 SH3KBP1Q96B97 665 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 TUBGCP3Q96CW5 907 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 Q96MT0 163 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 ANKHQ9HCJ1 492 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 DIABLOQ9NR28 239 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 COMMD8Q9NX08 183 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 OGDHLQ9ULD0 1010 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 HSPB11Q9Y547 144 aa13.6□□□□□ -0.23
LIG1-203ENST00000536218 PLXNA3P51805 1871 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 TEX51A0A1B0GUA7 166 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 UBXN8O00124 270 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 RGS5O15539 181 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 FAM20BO75063 409 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 TNFRSF21O75509 655 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 B3GALNT1O75752 331 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 CCNYL3P0C7X3 344 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 ZNF37AP17032 561 aaPredicted RBP13.59□□□□□ -0.23
LIG1-203ENST00000536218 GJA1P17302 382 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 CFL1P23528 166 aaKnown RBP13.59□□□□□ -0.23
LIG1-203ENST00000536218 CDKN1CP49918 316 aaPredicted RBP13.59□□□□□ -0.23
LIG1-203ENST00000536218 PLEKHG6Q3KR16 790 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 SYT6Q5T7P8 510 aaPredicted RBP13.59□□□□□ -0.23
LIG1-203ENST00000536218 LARP4Q71RC2 724 aaKnown RBP eCLIP13.59□□□□□ -0.23
LIG1-203ENST00000536218 GLT6D1Q7Z4J2 308 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 PAPD5Q8NDF8 572 aaKnown RBP13.59□□□□□ -0.23
LIG1-203ENST00000536218 OR4L1Q8NH43 312 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 RIBC2Q9H4K1 309 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 TM9SF3Q9HD45 589 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 USE1Q9NZ43 259 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 ORC6Q9Y5N6 252 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 INSIG1O15503 277 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 RGS10O43665 173 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 MITFO75030 526 aaPredicted RBP13.59□□□□□ -0.23
LIG1-203ENST00000536218 PAPSS2O95340 614 aaPredicted RBP13.59□□□□□ -0.23
LIG1-203ENST00000536218 URODP06132 367 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 CSF2RAP15509 400 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 POU3F3P20264 500 aaPredicted RBP13.59□□□□□ -0.23
LIG1-203ENST00000536218 GADD45AP24522 165 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 DSTNP60981 165 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 DBPQ10586 325 aaPredicted RBP13.59□□□□□ -0.23
LIG1-203ENST00000536218 AHSA2Q719I0 299 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 B3GNT8Q7Z7M8 397 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 CACTIN-AS1Q8N1I8 211 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 CDKN2AIPNLQ96HQ2 116 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 CDADC1Q9BWV3 514 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 TM6SF2Q9BZW4 377 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 RASSF1Q9NS23 344 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 RAPGEFL1Q9UHV5 662 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 TSR3Q9UJK0 312 aaKnown RBP13.59□□□□□ -0.23
LIG1-203ENST00000536218 A0A1B0GVM2 712 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 H3BQ06 376 aaPredicted RBP13.59□□□□□ -0.23
LIG1-203ENST00000536218 PLD2O14939 933 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 KDELR3O43731 214 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 KCNJ13O60928 360 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 ABLIM3O94929 683 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 SLITRK5O94991 958 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 ZNF250P15622 560 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 ALDH6A1Q02252 535 aaKnown RBP13.59□□□□□ -0.23
LIG1-203ENST00000536218 MRNIPQ6NTE8 343 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 ZNF549Q6P9A3 640 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 FAM86B1Q8N7N1 296 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 GALNT11Q8NCW6 608 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 OR8H1Q8NGG4 311 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 FATE1Q969F0 183 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 TSPAN17Q96FV3 270 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 UBXN10Q96LJ8 280 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 HDHD5Q9BXW7 423 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 ZNF334Q9HCZ1 680 aaPredicted RBP13.59□□□□□ -0.23
LIG1-203ENST00000536218 ACOT13Q9NPJ3 140 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 CATSPERZQ9NTU4 200 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 INTS7Q9NVH2 962 aaKnown RBP13.59□□□□□ -0.23
LIG1-203ENST00000536218 C3orf18Q9UK00 162 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 TBC1D24Q9ULP9 559 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 FCF1Q9Y324 198 aaKnown RBP13.59□□□□□ -0.23
LIG1-203ENST00000536218 GRIP1Q9Y3R0 1128 aa13.59□□□□□ -0.23
LIG1-203ENST00000536218 A8MT66 165 aa13.58□□□□□ -0.24
LIG1-203ENST00000536218 RPP40O75818 363 aaKnown RBP13.58□□□□□ -0.24
LIG1-203ENST00000536218 CSF2P04141 144 aa13.58□□□□□ -0.24
LIG1-203ENST00000536218 LIPAP38571 399 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms