RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 SIX6OS1Q8N1H7 587 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 CCDC63Q8NA47 563 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 THAP8Q8NA92 274 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 KBTBD8Q8NFY9 601 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 OR4K1Q8NGD4 311 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 GRHL3Q8TE85 626 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 UBLCP1Q8WVY7 318 aaPredicted RBP2.46□□□□□ -2.02
CD44-238ENST00000534296 HPSE2Q8WWQ2 592 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 IRGQQ8WZA9 623 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 TSACCQ96A04 125 aaPredicted RBP2.46□□□□□ -2.02
CD44-238ENST00000534296 ANKRD9Q96BM1 317 aaPredicted RBP2.46□□□□□ -2.02
CD44-238ENST00000534296 MOCOSQ96EN8 888 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 FER1L6-AS2Q96M78 137 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 USP28Q96RU2 1077 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 CPNE1Q99829 537 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 FGFBP2Q9BYJ0 223 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 NACAP1Q9BZK3 213 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 GPR88Q9GZN0 384 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 LAT2Q9GZY6 243 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 ZMYND12Q9H0C1 365 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 FAM207AQ9NSI2 230 aaPredicted RBP2.46□□□□□ -2.02
CD44-238ENST00000534296 MRGBPQ9NV56 204 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 PRMT7Q9NVM4 692 aaPredicted RBP2.46□□□□□ -2.02
CD44-238ENST00000534296 ARMCX3Q9UH62 379 aaPredicted RBP2.46□□□□□ -2.02
CD44-238ENST00000534296 GMEB2Q9UKD1 530 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 RNF150Q9ULK6 438 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 WDR37Q9Y2I8 494 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 PYGO1Q9Y3Y4 419 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 RIPK3Q9Y572 518 aa2.46□□□□□ -2.02
CD44-238ENST00000534296 COL2A1P02458 1487 aaPredicted RBP2.45□□□□□ -2.02
CD44-238ENST00000534296 KPNA7A9QM74 516 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 C9P02748 559 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 STAG3L1P0CL83 205 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 SMIM18P0DKX4 95 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 HAPLN1P10915 354 aaPredicted RBP2.45□□□□□ -2.02
CD44-238ENST00000534296 HSPA8P11142 646 aaKnown RBP2.45□□□□□ -2.02
CD44-238ENST00000534296 GLULP15104 373 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 PRKCIP41743 596 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 LIMK1P53667 647 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 GSDMDP57764 484 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 DLK1P80370 383 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 SP3Q02447 781 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 RBBP7Q16576 425 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 UGP2Q16851 508 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 SYT14P1Q58G82 188 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 HECTD3Q5T447 861 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 SHEQ5VZ18 495 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 CTR9Q6PD62 1173 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 C11orf88Q6PI97 169 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 G2E3Q7L622 706 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 LRRTM1Q86UE6 522 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 RTN4RL2Q86UN3 420 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 PIGZQ86VD9 579 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 KRTAP7-1Q8IUC3 87 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 TMEM139Q8IV31 216 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 MAPK1IP1LQ8NDC0 245 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 GPRC5AQ8NFJ5 357 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 OR5AP2Q8NGF4 316 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 OR13J1Q8NGT2 312 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 OR2T11Q8NH01 316 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 PHLDA1Q8WV24 401 aaPredicted RBP2.45□□□□□ -2.02
CD44-238ENST00000534296 METTL21AQ8WXB1 218 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 TAF15Q92804 592 aaKnown RBP eCLIP2.45□□□□□ -2.02
CD44-238ENST00000534296 LINC00615Q96LM1 132 aaPredicted RBP2.45□□□□□ -2.02
CD44-238ENST00000534296 AK8Q96MA6 479 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 IWS1Q96ST2 819 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 KRT12Q99456 494 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 FEVQ99581 238 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 RAD9AQ99638 391 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 PYGO2Q9BRQ0 406 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 INPP5KQ9BT40 448 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 SYT11Q9BT88 431 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 KATNB1Q9BVA0 655 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 DGCR6LQ9BY27 220 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 ANKRD2Q9GZV1 360 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 ARRDC1-AS1Q9H2J1 176 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 TRPV4Q9HBA0 871 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 A4GALTQ9NPC4 353 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 SDR39U1Q9NRG7 319 aaPredicted RBP2.45□□□□□ -2.02
CD44-238ENST00000534296 GSN-AS1Q9NRJ2 163 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 ARGLU1Q9NWB6 273 aaPredicted RBP2.45□□□□□ -2.02
CD44-238ENST00000534296 ERAP1Q9NZ08 941 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 PKD2L2Q9NZM6 624 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 OR6C2Q9NZP2 312 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 EPHA6Q9UF33 1036 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 SLC12A6Q9UHW9 1150 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 DAPK2Q9UIK4 370 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 TNNQ9UQP3 1299 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 CHKBQ9Y259 395 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 TMED3Q9Y3Q3 217 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 SMAD5-AS1Q9Y6J3 95 aa2.45□□□□□ -2.02
CD44-238ENST00000534296 SOS1Q07889 1333 aaPredicted RBP2.44□□□□□ -2.02
CD44-238ENST00000534296 A0A087X002 238 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 C2orf81A6NN90 581 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 PALM2-AKAP2B1ALY0 433 aaPredicted RBP2.44□□□□□ -2.02
CD44-238ENST00000534296 RLN1P04808 185 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 IGHV4-31P0DP07 118 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 SFTPDP35247 375 aa2.44□□□□□ -2.02
CD44-238ENST00000534296 TNNT3P45378 269 aaPredicted RBP2.44□□□□□ -2.02
CD44-238ENST00000534296 LBX1P52954 281 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms