RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	FAM20A	Q96MK3	541 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	KRT12	Q99456	494 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	FERMT1	Q9BQL6	677 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	SYT11	Q9BT88	431 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	CLEC7A	Q9BXN2	247 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	FGFBP2	Q9BYJ0	223 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	PANK2	Q9BZ23	570 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	TRIM15	Q9C019	465 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	SHARPIN	Q9H0F6	387 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	OR6C2	Q9NZP2	312 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	ASIC3	Q9UHC3	531 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553	SLC24A2	Q9UI40	661 aa		4.05	□□□□□ -1.76
CD44-223	ENST00000526553		A0A1W2PPM1	405 aa		4.04	□□□□□ -1.76
CD44-223	ENST00000526553	ARHGEF37	A1IGU5	675 aa		4.04	□□□□□ -1.76
CD44-223	ENST00000526553		O00370	1275 aa		4.04	□□□□□ -1.76
CD44-223	ENST00000526553	SLC7A4	O43246	635 aa		4.04	□□□□□ -1.76
CD44-223	ENST00000526553	CDK2AP2	O75956	126 aa		4.04	□□□□□ -1.76
CD44-223	ENST00000526553	SIX3	O95343	332 aa	Predicted RBP	4.04	□□□□□ -1.76
CD44-223	ENST00000526553	EEF1B2	P24534	225 aa	Known RBP	4.04	□□□□□ -1.76
CD44-223	ENST00000526553	HOXC13	P31276	330 aa		4.04	□□□□□ -1.76
CD44-223	ENST00000526553	RPL21	P46778	160 aa	Known RBP	4.04	□□□□□ -1.76
CD44-223	ENST00000526553	TAF6	P49848	677 aa		4.04	□□□□□ -1.76
CD44-223	ENST00000526553	ITGA7	Q13683	1181 aa		4.04	□□□□□ -1.76
CD44-223	ENST00000526553	SQLE	Q14534	574 aa		4.04	□□□□□ -1.76
CD44-223	ENST00000526553	ZNF273	Q14593	569 aa		4.04	□□□□□ -1.76
CD44-223	ENST00000526553	HERC3	Q15034	1050 aa		4.04	□□□□□ -1.76
CD44-223	ENST00000526553	SLC35D3	Q5M8T2	416 aa		4.04	□□□□□ -1.76
CD44-223	ENST00000526553	KRT39	Q6A163	491 aa		4.04	□□□□□ -1.76
CD44-223	ENST00000526553	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	4.04	□□□□□ -1.76
CD44-223	ENST00000526553	TRAT1	Q6PIZ9	186 aa		4.04	□□□□□ -1.76
CD44-223	ENST00000526553	METTL7B	Q6UX53	244 aa		4.04	□□□□□ -1.76
CD44-223	ENST00000526553	CENPV	Q7Z7K6	275 aa	Predicted RBP	4.04	□□□□□ -1.76
CD44-223	ENST00000526553	SNX32	Q86XE0	403 aa		4.04	□□□□□ -1.76
CD44-223	ENST00000526553	ZNF440	Q8IYI8	595 aa		4.04	□□□□□ -1.76
CD44-223	ENST00000526553	TMCO5A	Q8N6Q1	288 aa		4.04	□□□□□ -1.76
CD44-223	ENST00000526553	THAP8	Q8NA92	274 aa		4.04	□□□□□ -1.76
CD44-223	ENST00000526553	MSANTD4	Q8NCY6	345 aa		4.04	□□□□□ -1.76
CD44-223	ENST00000526553	MOB3A	Q96BX8	217 aa		4.04	□□□□□ -1.76
CD44-223	ENST00000526553	LRRC3B	Q96PB8	259 aa		4.04	□□□□□ -1.76
CD44-223	ENST00000526553	RBM4B	Q9BQ04	359 aa	Known RBP	4.04	□□□□□ -1.76
CD44-223	ENST00000526553	MRPL9	Q9BYD2	267 aa	Known RBP	4.04	□□□□□ -1.76
CD44-223	ENST00000526553	ST6GALNAC4	Q9H4F1	302 aa		4.04	□□□□□ -1.76
CD44-223	ENST00000526553	COPS7B	Q9H9Q2	264 aa	Predicted RBP	4.04	□□□□□ -1.76
CD44-223	ENST00000526553	MYNN	Q9NPC7	610 aa		4.04	□□□□□ -1.76
CD44-223	ENST00000526553	PPAN	Q9NQ55	473 aa	Known RBP	4.04	□□□□□ -1.76
CD44-223	ENST00000526553	ERAP1	Q9NZ08	941 aa		4.04	□□□□□ -1.76
CD44-223	ENST00000526553	NOTCH3	Q9UM47	2321 aa		4.04	□□□□□ -1.76
CD44-223	ENST00000526553		A0A087WV48	116 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	ANXA2P2	A6NMY6	339 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	TRIM77	I1YAP6	450 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	PTGES	O14684	152 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	TGDS	O95455	350 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	VTN	P04004	478 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	ATP6V1B1	P15313	513 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	CAST	P20810	708 aa	Known RBP	4.03	□□□□□ -1.76
CD44-223	ENST00000526553	ACHE	P22303	614 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	CSTF2	P33240	577 aa	Known RBP eCLIP	4.03	□□□□□ -1.76
CD44-223	ENST00000526553	PTGER4	P35408	488 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	NPY4R	P50391	375 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	CAPZA1	P52907	286 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	LIMK1	P53667	647 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	MAPK12	P53778	367 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	KLC1	Q07866	573 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	LPAL2	Q16609	132 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	SLC10A5	Q5PT55	438 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	BSPRY	Q5W0U4	402 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	CAVIN1	Q6NZI2	390 aa	Known RBP	4.03	□□□□□ -1.76
CD44-223	ENST00000526553	SUSD1	Q6UWL2	747 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	G2E3	Q7L622	706 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	NUP54	Q7Z3B4	507 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	CCDC91	Q7Z6B0	441 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	HOGA1	Q86XE5	327 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	UNC45B	Q8IWX7	931 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	MMD2	Q8IY49	270 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	BMPER	Q8N8U9	685 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	ZNRF4	Q8WWF5	429 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	AZIN2	Q96A70	460 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	MGME1	Q9BQP7	344 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	MTMR12	Q9C0I1	747 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	DNAI2	Q9GZS0	605 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	THAP2	Q9H0W7	228 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	4.03	□□□□□ -1.76
CD44-223	ENST00000526553	MAN1B1	Q9UKM7	699 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	TNN	Q9UQP3	1299 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	TMED3	Q9Y3Q3	217 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	LIPG	Q9Y5X9	500 aa		4.03	□□□□□ -1.76
CD44-223	ENST00000526553	TRAV34	A0A0B4J273	112 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	ARPC2	O15144	300 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	DIAPH2	O60879	1101 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	NXPH2	O95156	264 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	TRIM49	P0CI25	452 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	TRIM49C	P0CI26	452 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	HSPA4	P34932	840 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	LEPR	P48357	1165 aa	Known RBP	4.02	□□□□□ -1.77
CD44-223	ENST00000526553	ASCL1	P50553	236 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	PAX9	P55771	341 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	RBPJ	Q06330	500 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	PHKG1	Q16816	387 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	HLA-B	Q31612	363 aa		4.02	□□□□□ -1.77
CD44-223	ENST00000526553	TWISTNB	Q3B726	338 aa	Predicted RBP	4.02	□□□□□ -1.77

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