RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 SRPX2O60687 465 aaPredicted RBP13.56□□□□□ -0.24
CPSF1-201ENST00000526271 ZSCAN5DPP0CG00 497 aa13.56□□□□□ -0.24
CPSF1-201ENST00000526271 PIM1P11309 404 aaPredicted RBP13.56□□□□□ -0.24
CPSF1-201ENST00000526271 ADRA1DP25100 572 aa13.56□□□□□ -0.24
CPSF1-201ENST00000526271 SLC26A3P40879 764 aa13.56□□□□□ -0.24
CPSF1-201ENST00000526271 PER3P56645 1201 aa13.56□□□□□ -0.24
CPSF1-201ENST00000526271 ZNF425Q6IV72 752 aa13.56□□□□□ -0.24
CPSF1-201ENST00000526271 NCCRP1Q6ZVX7 275 aaPredicted RBP13.56□□□□□ -0.24
CPSF1-201ENST00000526271 NDUFAF7Q7L592 441 aa13.56□□□□□ -0.24
CPSF1-201ENST00000526271 ZC3H7AQ8IWR0 971 aaKnown RBP13.56□□□□□ -0.24
CPSF1-201ENST00000526271 OR6P1Q8NGX9 317 aa13.56□□□□□ -0.24
CPSF1-201ENST00000526271 SLC22A18Q96BI1 424 aa13.56□□□□□ -0.24
CPSF1-201ENST00000526271 IMMP1LQ96LU5 166 aa13.56□□□□□ -0.24
CPSF1-201ENST00000526271 PHF12Q96QT6 1004 aa13.56□□□□□ -0.24
CPSF1-201ENST00000526271 OR2A5Q96R48 311 aa13.56□□□□□ -0.24
CPSF1-201ENST00000526271 FERMT1Q9BQL6 677 aa13.56□□□□□ -0.24
CPSF1-201ENST00000526271 DPH7Q9BTV6 452 aa13.56□□□□□ -0.24
CPSF1-201ENST00000526271 ZNF282Q9UDV7 671 aaPredicted RBP13.56□□□□□ -0.24
CPSF1-201ENST00000526271 TSR3Q9UJK0 312 aaKnown RBP13.56□□□□□ -0.24
CPSF1-201ENST00000526271 TTC7AQ9ULT0 858 aaPredicted RBP13.56□□□□□ -0.24
CPSF1-201ENST00000526271 OR2W5A6NFC9 320 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 ARHGEF33A8MVX0 844 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 MAN1A2O60476 641 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 UNC5CO95185 931 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 MATN4O95460 622 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 EIF2S1P05198 315 aaKnown RBP13.55□□□□□ -0.24
CPSF1-201ENST00000526271 SERPINA7P05543 415 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 SNRPB2P08579 225 aaKnown RBP13.55□□□□□ -0.24
CPSF1-201ENST00000526271 NMBRP28336 390 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 CA7P43166 264 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 ARG2P78540 354 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 MAT1AQ00266 395 aaKnown RBP13.55□□□□□ -0.24
CPSF1-201ENST00000526271 SIX1Q15475 284 aaPredicted RBP13.55□□□□□ -0.24
CPSF1-201ENST00000526271 ZNF630Q2M218 657 aaPredicted RBP13.55□□□□□ -0.24
CPSF1-201ENST00000526271 FAM214AQ32MH5 1076 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 PRMT9Q6P2P2 845 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 CNSTQ6PJW8 725 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 TMEM205Q6UW68 189 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 SUSD1Q6UWL2 747 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 LINC00523Q86TU6 105 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 PAQR7Q86WK9 346 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 CHERPQ8IWX8 916 aaKnown RBP13.55□□□□□ -0.24
CPSF1-201ENST00000526271 REXO1L1PQ8IX06 675 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 KBTBD2Q8IY47 623 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 RNF10Q8N5U6 811 aaKnown RBP13.55□□□□□ -0.24
CPSF1-201ENST00000526271 RAD51AP1Q96B01 352 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 LURAP1Q96LR2 239 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 MAGEB10Q96LZ2 347 aaPredicted RBP13.55□□□□□ -0.24
CPSF1-201ENST00000526271 SLC30A3Q99726 388 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 ACAT2Q9BWD1 397 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 TSGA10Q9BZW7 698 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 INTS7Q9NVH2 962 aaKnown RBP13.55□□□□□ -0.24
CPSF1-201ENST00000526271 IL1RAPL1Q9NZN1 696 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 SLC39A10Q9ULF5 831 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 PYCARDQ9ULZ3 195 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 KLF2Q9Y5W3 355 aaPredicted RBP13.55□□□□□ -0.24
CPSF1-201ENST00000526271 CAPN6Q9Y6Q1 641 aa13.55□□□□□ -0.24
CPSF1-201ENST00000526271 NSG1A0A0A6YYJ2 146 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 TRAV17A0A0B4J275 112 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 IGHV3-20A0A0C4DH32 117 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 PSMD3O43242 534 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 ZSCAN12O43309 604 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 LIASO43766 372 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 NIPSNAP2O75323 286 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 USP1O94782 785 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 FKBP9O95302 570 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 BMP10O95393 424 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 STATHP02808 62 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 APOA4P06727 396 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 FBLP22087 321 aaKnown RBP13.54□□□□□ -0.24
CPSF1-201ENST00000526271 RPS3P23396 243 aaKnown RBP eCLIP13.54□□□□□ -0.24
CPSF1-201ENST00000526271 CARSP49589 748 aaKnown RBP13.54□□□□□ -0.24
CPSF1-201ENST00000526271 EMP2P54851 167 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 DSG2Q14126 1118 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 FASTKD1Q53R41 847 aaKnown RBP13.54□□□□□ -0.24
CPSF1-201ENST00000526271 HIBCHQ6NVY1 386 aaPredicted RBP13.54□□□□□ -0.24
CPSF1-201ENST00000526271 CES3Q6UWW8 571 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 GFRALQ6UXV0 394 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 BNC2Q6ZN30 1099 aaPredicted RBP13.54□□□□□ -0.24
CPSF1-201ENST00000526271 PRSS41Q7RTY9 318 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 MRGPRGQ86SM5 289 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 LRRC56Q8IYG6 542 aaPredicted RBP13.54□□□□□ -0.24
CPSF1-201ENST00000526271 DNAAF3Q8N9W5 541 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 ADAMTS18Q8TE60 1221 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 FAM136AQ96C01 138 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 HES6Q96HZ4 224 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 ZFYVE21Q9BQ24 234 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 PLCD4Q9BRC7 762 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 HES7Q9BYE0 225 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 ZNF700Q9H0M5 742 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 CATSPERZQ9NTU4 200 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 ABI3Q9P2A4 366 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 MED16Q9Y2X0 877 aa13.54□□□□□ -0.24
CPSF1-201ENST00000526271 TRGV8A0A0C4DH27 118 aa13.53□□□□□ -0.24
CPSF1-201ENST00000526271 ERI2A8K979 691 aaKnown RBP13.53□□□□□ -0.24
CPSF1-201ENST00000526271 GOLGA8KD6RF30 607 aa13.53□□□□□ -0.24
CPSF1-201ENST00000526271 GOLGA8TH3BQL2 631 aa13.53□□□□□ -0.24
CPSF1-201ENST00000526271 CD3EAPO15446 510 aaKnown RBP13.53□□□□□ -0.24
CPSF1-201ENST00000526271 KRT38O76015 456 aa13.53□□□□□ -0.24
CPSF1-201ENST00000526271 HTR1EP28566 365 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 99.8 ms