RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 HPCAL4Q9UM19 191 aa4.46□□□□□ -1.7
USP48-211ENST00000526044 B3GNT3Q9Y2A9 372 aa4.46□□□□□ -1.7
USP48-211ENST00000526044 CRYL1Q9Y2S2 319 aa4.46□□□□□ -1.7
USP48-211ENST00000526044 HEY1Q9Y5J3 304 aa4.46□□□□□ -1.7
USP48-211ENST00000526044 RANBP2P49792 3224 aaKnown RBP4.46□□□□□ -1.7
USP48-211ENST00000526044 MIA3Q5JRA6 1907 aa4.46□□□□□ -1.7
USP48-211ENST00000526044 TICRRQ7Z2Z1 1910 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 A0A0D9SEW6 157 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 GOLGA6L10A0A0M3HER8 536 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 SYNDIG1LA6NDD5 238 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 ARHGAP42A6NI28 874 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 HACD1B0YJ81 288 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.45□□□□□ -1.7
USP48-211ENST00000526044 H7C0C1 242 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 APOC4-APOC2K7ER74 178 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 PGRMC1O00264 195 aaKnown RBP4.45□□□□□ -1.7
USP48-211ENST00000526044 DFFAO00273 331 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 ADAM10O14672 748 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 HOXC11O43248 304 aaPredicted RBP4.45□□□□□ -1.7
USP48-211ENST00000526044 KDELR3O43731 214 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 TULP3O75386 442 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 TIPRLO75663 272 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 RPP40O75818 363 aaKnown RBP4.45□□□□□ -1.7
USP48-211ENST00000526044 PENKP01210 267 aaPredicted RBP4.45□□□□□ -1.7
USP48-211ENST00000526044 APOC2P02655 101 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 APODP05090 189 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 CISD3P0C7P0 127 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 ST6GAL1P15907 406 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 POLR2EP19388 210 aaKnown RBP4.45□□□□□ -1.7
USP48-211ENST00000526044 TFEBP19484 476 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 CCNCP24863 283 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 STIP1P31948 543 aaKnown RBP4.45□□□□□ -1.7
USP48-211ENST00000526044 KRT20P35900 424 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 CSKP41240 450 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 ATP5OP48047 213 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 PAPOLAP51003 745 aaKnown RBP4.45□□□□□ -1.7
USP48-211ENST00000526044 SGSHP51688 502 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 PLK1P53350 603 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 EIF3EP60228 445 aaKnown RBP4.45□□□□□ -1.7
USP48-211ENST00000526044 OTUD4Q01804 1114 aaKnown RBP4.45□□□□□ -1.7
USP48-211ENST00000526044 GNA12Q03113 381 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 GBE1Q04446 702 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 CKAP4Q07065 602 aaKnown RBP4.45□□□□□ -1.7
USP48-211ENST00000526044 IL10RBQ08334 325 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 SLC20A2Q08357 652 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 DMWDQ09019 674 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 AP1B1Q10567 949 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 XRCC4Q13426 336 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 SNX1Q13596 522 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 DMC1Q14565 340 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 PDK1Q15118 436 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 PDCD2Q16342 344 aaPredicted RBP4.45□□□□□ -1.7
USP48-211ENST00000526044 CCNG2Q16589 344 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 WHAMMP3Q1A5X7 153 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 ANXA2RQ3ZCQ2 193 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 PARP15Q460N3 678 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 SLC45A4Q5BKX6 768 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 FSCBQ5H9T9 825 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 INTS11Q5TA45 600 aaKnown RBP4.45□□□□□ -1.7
USP48-211ENST00000526044 ATPAF1Q5TC12 328 aaPredicted RBP4.45□□□□□ -1.7
USP48-211ENST00000526044 NCBP2-AS2Q69YL0 99 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 RALGPS2Q86X27 583 aaPredicted RBP4.45□□□□□ -1.7
USP48-211ENST00000526044 LRRC49Q8IUZ0 686 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 SCARB1Q8WTV0 552 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 NSMCE1Q8WV22 266 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 C1orf54Q8WWF1 131 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 DNASE1L2Q92874 299 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 ARHGEF2Q92974 986 aaKnown RBP4.45□□□□□ -1.7
USP48-211ENST00000526044 MAGOHBQ96A72 148 aaKnown RBP4.45□□□□□ -1.7
USP48-211ENST00000526044 HAUS1Q96CS2 278 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 EID2BQ96D98 161 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 TRMT61AQ96FX7 289 aaKnown RBP4.45□□□□□ -1.7
USP48-211ENST00000526044 CELF6Q96J87 481 aaKnown RBP4.45□□□□□ -1.7
USP48-211ENST00000526044 TSGA13Q96PP4 275 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 FERMT1Q9BQL6 677 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 FEM1AQ9BSK4 669 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 BRD8Q9H0E9 1235 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 CCDC134Q9H6E4 229 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 LRRC19Q9H756 370 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 RASSF1Q9NS23 344 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 DNAJC17Q9NVM6 304 aaKnown RBP4.45□□□□□ -1.7
USP48-211ENST00000526044 ELOVL5Q9NYP7 299 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 VPS28Q9UK41 221 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 CLEC4EQ9ULY5 219 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 PLA2G4CQ9UP65 541 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 MFHAS1Q9Y4C4 1052 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 SHROOM3Q8TF72 1996 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 REV3LO60673 3130 aa4.45□□□□□ -1.7
USP48-211ENST00000526044 SLC22A23A1A5C7 686 aa4.44□□□□□ -1.7
USP48-211ENST00000526044 CTAGE15A4D2H0 777 aa4.44□□□□□ -1.7
USP48-211ENST00000526044 TBC1D3BA6NDS4 549 aa4.44□□□□□ -1.7
USP48-211ENST00000526044 CCDC188H7C350 402 aa4.44□□□□□ -1.7
USP48-211ENST00000526044 J3KR12 359 aa4.44□□□□□ -1.7
USP48-211ENST00000526044 MCF2LO15068 1137 aa4.44□□□□□ -1.7
USP48-211ENST00000526044 LIASO43766 372 aa4.44□□□□□ -1.7
USP48-211ENST00000526044 MFSD11O43934 449 aa4.44□□□□□ -1.7
USP48-211ENST00000526044 CACNG3O60359 315 aa4.44□□□□□ -1.7
USP48-211ENST00000526044 ZNF189O75820 626 aaPredicted RBP4.44□□□□□ -1.7
USP48-211ENST00000526044 TNFRSF6BO95407 300 aa4.44□□□□□ -1.7
USP48-211ENST00000526044 JCHAINP01591 159 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms