RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 FPGTO14772 594 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 ARHGEF9O43307 516 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 APOA4P06727 396 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 SLC2A2P11168 524 aaPredicted RBP3.76□□□□□ -1.81
CD44-215ENST00000525241 TCF4P15884 667 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 TYMPP19971 482 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 CLK1P49759 484 aaKnown RBP3.76□□□□□ -1.81
CD44-215ENST00000525241 LUMP51884 338 aaPredicted RBP3.76□□□□□ -1.81
CD44-215ENST00000525241 PAX9P55771 341 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 CSNK2BP67870 215 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 NONOQ15233 471 aaKnown RBP eCLIP3.76□□□□□ -1.81
CD44-215ENST00000525241 PTGISQ16647 500 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 C6orf136Q5SQH8 315 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 SUSD4Q5VX71 490 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 SLFN11Q7Z7L1 901 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 CCAR2Q8N163 923 aaKnown RBP3.76□□□□□ -1.81
CD44-215ENST00000525241 ZNF614Q8N883 585 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 GPRC5AQ8NFJ5 357 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 SMAP2Q8WU79 429 aaPredicted RBP3.76□□□□□ -1.81
CD44-215ENST00000525241 GATAD1Q8WUU5 269 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 ARHGAP45Q92619 1136 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 RMDN2Q96LZ7 410 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 LINC00479Q96M42 142 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 ZNF599Q96NL3 588 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 NECTIN4Q96NY8 510 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 EGFL8Q99944 293 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 KATNB1Q9BVA0 655 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 CLEC7AQ9BXN2 247 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 AP1M1Q9BXS5 423 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 FAM49AQ9H0Q0 323 aaPredicted RBP3.76□□□□□ -1.81
CD44-215ENST00000525241 FN3KQ9H479 309 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 XAB2Q9HCS7 855 aaKnown RBP3.76□□□□□ -1.81
CD44-215ENST00000525241 ERAP1Q9NZ08 941 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 C19orf25Q9UFG5 118 aaPredicted RBP3.76□□□□□ -1.81
CD44-215ENST00000525241 ASIC3Q9UHC3 531 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 HEG1Q9ULI3 1381 aa3.76□□□□□ -1.81
CD44-215ENST00000525241 BAG3O95817 575 aa3.75□□□□□ -1.81
CD44-215ENST00000525241 CLDN1O95832 211 aa3.75□□□□□ -1.81
CD44-215ENST00000525241 SERPINB2P05120 415 aa3.75□□□□□ -1.81
CD44-215ENST00000525241 ACAT1P24752 427 aaKnown RBP3.75□□□□□ -1.81
CD44-215ENST00000525241 PSMA3P25788 255 aa3.75□□□□□ -1.81
CD44-215ENST00000525241 HSD17B3P37058 310 aa3.75□□□□□ -1.81
CD44-215ENST00000525241 MTCP1P56278 107 aa3.75□□□□□ -1.81
CD44-215ENST00000525241 ILF2Q12905 390 aaKnown RBP3.75□□□□□ -1.81
CD44-215ENST00000525241 ZNF74Q16587 644 aa3.75□□□□□ -1.81
CD44-215ENST00000525241 SGSM1Q2NKQ1 1148 aa3.75□□□□□ -1.81
CD44-215ENST00000525241 FIP1L1Q6UN15 594 aaKnown RBP3.75□□□□□ -1.81
CD44-215ENST00000525241 LEKR1Q6ZMV7 388 aa3.75□□□□□ -1.81
CD44-215ENST00000525241 Q6ZRP5 223 aa3.75□□□□□ -1.81
CD44-215ENST00000525241 ADCK2Q7Z695 626 aa3.75□□□□□ -1.81
CD44-215ENST00000525241 ABI3BPQ7Z7G0 1075 aa3.75□□□□□ -1.81
CD44-215ENST00000525241 FAM219AQ8IW50 185 aa3.75□□□□□ -1.81
CD44-215ENST00000525241 IQUBQ8NA54 791 aa3.75□□□□□ -1.81
CD44-215ENST00000525241 SLC37A3Q8NCC5 494 aa3.75□□□□□ -1.81
CD44-215ENST00000525241 OR7A2PQ8NGA2 310 aa3.75□□□□□ -1.81
CD44-215ENST00000525241 PIK3R3Q92569 461 aa3.75□□□□□ -1.81
CD44-215ENST00000525241 LPAR4Q99677 370 aa3.75□□□□□ -1.81
CD44-215ENST00000525241 SYT15Q9BQS2 421 aa3.75□□□□□ -1.81
CD44-215ENST00000525241 A0A1W2PR80 420 aa3.74□□□□□ -1.81
CD44-215ENST00000525241 ANXA2P2A6NMY6 339 aa3.74□□□□□ -1.81
CD44-215ENST00000525241 C15orf61A6NNL5 157 aa3.74□□□□□ -1.81
CD44-215ENST00000525241 ZNF500O60304 480 aaPredicted RBP3.74□□□□□ -1.81
CD44-215ENST00000525241 KRT33AO76009 404 aa3.74□□□□□ -1.81
CD44-215ENST00000525241 ATP1B1P05026 303 aa3.74□□□□□ -1.81
CD44-215ENST00000525241 QDPRP09417 244 aa3.74□□□□□ -1.81
CD44-215ENST00000525241 FDPSP14324 419 aaKnown RBP3.74□□□□□ -1.81
CD44-215ENST00000525241 CYP2A7P20853 494 aa3.74□□□□□ -1.81
CD44-215ENST00000525241 ALDH1B1P30837 517 aa3.74□□□□□ -1.81
CD44-215ENST00000525241 OPRL1P41146 370 aa3.74□□□□□ -1.81
CD44-215ENST00000525241 NPY4RP50391 375 aa3.74□□□□□ -1.81
CD44-215ENST00000525241 DNA2P51530 1060 aa3.74□□□□□ -1.81
CD44-215ENST00000525241 LBX1P52954 281 aa3.74□□□□□ -1.81
CD44-215ENST00000525241 HILS1P60008 231 aa3.74□□□□□ -1.81
CD44-215ENST00000525241 MYL7Q01449 175 aa3.74□□□□□ -1.81
CD44-215ENST00000525241 KRTAP27-1Q3LI81 207 aa3.74□□□□□ -1.81
CD44-215ENST00000525241 IL27RAQ6UWB1 636 aa3.74□□□□□ -1.81
CD44-215ENST00000525241 ENPP7Q6UWV6 458 aa3.74□□□□□ -1.81
CD44-215ENST00000525241 ANKRD33Q7Z3H0 272 aa3.74□□□□□ -1.81
CD44-215ENST00000525241 ZNRF4Q8WWF5 429 aa3.74□□□□□ -1.81
CD44-215ENST00000525241 ZNF486Q96H40 463 aaPredicted RBP3.74□□□□□ -1.81
CD44-215ENST00000525241 KRT12Q99456 494 aa3.74□□□□□ -1.81
CD44-215ENST00000525241 NKX3-1Q99801 234 aaPredicted RBP3.74□□□□□ -1.81
CD44-215ENST00000525241 ACTL8Q9H568 366 aa3.74□□□□□ -1.81
CD44-215ENST00000525241 CHCHD3Q9NX63 227 aaKnown RBP3.74□□□□□ -1.81
CD44-215ENST00000525241 PPP1R3CQ9UQK1 317 aa3.74□□□□□ -1.81
CD44-215ENST00000525241 IGKV3D-15A0A087WSY6 115 aa3.73□□□□□ -1.81
CD44-215ENST00000525241 A0A087WV48 116 aa3.73□□□□□ -1.81
CD44-215ENST00000525241 TEX28O15482 410 aa3.73□□□□□ -1.81
CD44-215ENST00000525241 MOCS3O95396 460 aa3.73□□□□□ -1.81
CD44-215ENST00000525241 DUS4LO95620 317 aaKnown RBP3.73□□□□□ -1.81
CD44-215ENST00000525241 SERPING1P05155 500 aa3.73□□□□□ -1.81
CD44-215ENST00000525241 RGS7P49802 495 aa3.73□□□□□ -1.81
CD44-215ENST00000525241 GMPSP49915 693 aaPredicted RBP3.73□□□□□ -1.81
CD44-215ENST00000525241 DRP2Q13474 957 aa3.73□□□□□ -1.81
CD44-215ENST00000525241 OPCMLQ14982 345 aa3.73□□□□□ -1.81
CD44-215ENST00000525241 EFTUD2Q15029 972 aaKnown RBP eCLIP3.73□□□□□ -1.81
CD44-215ENST00000525241 HLA-BQ31612 363 aa3.73□□□□□ -1.81
CD44-215ENST00000525241 FAM174BQ3ZCQ3 159 aa3.73□□□□□ -1.81
CD44-215ENST00000525241 LYSMD4Q5XG99 296 aa3.73□□□□□ -1.81
CD44-215ENST00000525241 C11orf57Q6ZUT1 292 aaPredicted RBP3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms