RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 TEKT2Q9UIF3 430 aa19.27■□□□□ 0.68
SQSTM1-215ENST00000514093 MKL2Q9ULH7 1088 aa19.27■□□□□ 0.68
SQSTM1-215ENST00000514093 CDC14AQ9UNH5 594 aa19.27■□□□□ 0.68
SQSTM1-215ENST00000514093 RUVBL2Q9Y230 463 aaKnown RBP19.27■□□□□ 0.68
SQSTM1-215ENST00000514093 NFS1Q9Y697 457 aa19.27■□□□□ 0.68
SQSTM1-215ENST00000514093 RCCD1A6NED2 376 aa19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 TTI1O43156 1089 aa19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 SEC24DO94855 1032 aaPredicted RBP19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 FKBP9O95302 570 aa19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 GOT2P00505 430 aaKnown RBP19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 ICAM2P13598 275 aa19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 CD1EP15812 388 aa19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 HSF1Q00613 529 aa19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 SEMA3AQ14563 771 aa19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 HKDC1Q2TB90 917 aa19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 KRTCAP3Q53RY4 240 aa19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 TMEM205Q6UW68 189 aa19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 ACBD4Q8NC06 268 aa19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 OR2A1Q8NGT9 310 aa19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 ZFYVE21Q9BQ24 234 aa19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 TMEM121Q9BTD3 319 aa19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 TUBB6Q9BUF5 446 aa19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 ACAT2Q9BWD1 397 aa19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 LRRC40Q9H9A6 602 aa19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 ABHD10Q9NUJ1 306 aa19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 C14orf105Q9NVL8 296 aa19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 SLC2A6Q9UGQ3 507 aa19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 TTC7AQ9ULT0 858 aaPredicted RBP19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 TFR2Q9UP52 801 aa19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 RUVBL1Q9Y265 456 aaKnown RBP19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 SBDSQ9Y3A5 250 aaKnown RBP eCLIP19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 KLK4Q9Y5K2 254 aa19.26■□□□□ 0.67
SQSTM1-215ENST00000514093 A0A1W2PPV9 198 aa19.25■□□□□ 0.67
SQSTM1-215ENST00000514093 APOA4P06727 396 aa19.25■□□□□ 0.67
SQSTM1-215ENST00000514093 ABOP16442 354 aa19.25■□□□□ 0.67
SQSTM1-215ENST00000514093 HOXB4P17483 251 aaPredicted RBP19.25■□□□□ 0.67
SQSTM1-215ENST00000514093 PSMA3P25788 255 aa19.25■□□□□ 0.67
SQSTM1-215ENST00000514093 SLC26A3P40879 764 aa19.25■□□□□ 0.67
SQSTM1-215ENST00000514093 MAT1AQ00266 395 aaKnown RBP19.25■□□□□ 0.67
SQSTM1-215ENST00000514093 FASTKQ14296 549 aaKnown RBP19.25■□□□□ 0.67
SQSTM1-215ENST00000514093 PARP6Q2NL67 630 aa19.25■□□□□ 0.67
SQSTM1-215ENST00000514093 SPINK14Q6IE38 97 aa19.25■□□□□ 0.67
SQSTM1-215ENST00000514093 TTC23LQ6PF05 361 aa19.25■□□□□ 0.67
SQSTM1-215ENST00000514093 LDB1Q86U70 411 aaPredicted RBP19.25■□□□□ 0.67
SQSTM1-215ENST00000514093 ZC3H7AQ8IWR0 971 aaKnown RBP19.25■□□□□ 0.67
SQSTM1-215ENST00000514093 SHISA5Q8N114 240 aa19.25■□□□□ 0.67
SQSTM1-215ENST00000514093 OR13J1Q8NGT2 312 aa19.25■□□□□ 0.67
SQSTM1-215ENST00000514093 CA5BP1Q8WTZ4 195 aa19.25■□□□□ 0.67
SQSTM1-215ENST00000514093 SKA2Q8WVK7 121 aaPredicted RBP19.25■□□□□ 0.67
SQSTM1-215ENST00000514093 RAD51AP1Q96B01 352 aa19.25■□□□□ 0.67
SQSTM1-215ENST00000514093 SDCCAG3Q96C92 435 aa19.25■□□□□ 0.67
SQSTM1-215ENST00000514093 DPH7Q9BTV6 452 aa19.25■□□□□ 0.67
SQSTM1-215ENST00000514093 CARD6Q9BX69 1037 aa19.25■□□□□ 0.67
SQSTM1-215ENST00000514093 RAB11FIP5Q9BXF6 653 aa19.25■□□□□ 0.67
SQSTM1-215ENST00000514093 MKKSQ9NPJ1 570 aaPredicted RBP19.25■□□□□ 0.67
SQSTM1-215ENST00000514093 INTUQ9ULD6 942 aa19.25■□□□□ 0.67
SQSTM1-215ENST00000514093 NIPBLQ6KC79 2804 aaeCLIP19.24■□□□□ 0.67
SQSTM1-215ENST00000514093 A0A0A6YYC8 382 aaPredicted RBP19.24■□□□□ 0.67
SQSTM1-215ENST00000514093 A0A0U1RQJ8 604 aa19.24■□□□□ 0.67
SQSTM1-215ENST00000514093 OR2A25A4D2G3 310 aa19.24■□□□□ 0.67
SQSTM1-215ENST00000514093 GOLGA6L19H0YKK7 550 aa19.24■□□□□ 0.67
SQSTM1-215ENST00000514093 I3L1I5 382 aaPredicted RBP19.24■□□□□ 0.67
SQSTM1-215ENST00000514093 PJA2O43164 708 aa19.24■□□□□ 0.67
SQSTM1-215ENST00000514093 SLCO2B1O94956 709 aa19.24■□□□□ 0.67
SQSTM1-215ENST00000514093 C1orf105O95561 183 aa19.24■□□□□ 0.67
SQSTM1-215ENST00000514093 ANXA5P08758 320 aa19.24■□□□□ 0.67
SQSTM1-215ENST00000514093 C8orf89P0DMQ9 161 aa19.24■□□□□ 0.67
SQSTM1-215ENST00000514093 AOAHP28039 575 aa19.24■□□□□ 0.67
SQSTM1-215ENST00000514093 AP2B1P63010 937 aa19.24■□□□□ 0.67
SQSTM1-215ENST00000514093 TUBA3CQ13748 450 aa19.24■□□□□ 0.67
SQSTM1-215ENST00000514093 ACER2Q5QJU3 275 aa19.24■□□□□ 0.67
SQSTM1-215ENST00000514093 AADACL2Q6P093 401 aa19.24■□□□□ 0.67
SQSTM1-215ENST00000514093 LRRC8BQ6P9F7 803 aa19.24■□□□□ 0.67
SQSTM1-215ENST00000514093 TUBA3EQ6PEY2 450 aa19.24■□□□□ 0.67
SQSTM1-215ENST00000514093 DOLPP1Q86YN1 238 aa19.24■□□□□ 0.67
SQSTM1-215ENST00000514093 CSNK1A1LQ8N752 337 aa19.24■□□□□ 0.67
SQSTM1-215ENST00000514093 MDS2Q8NDY4 140 aa19.24■□□□□ 0.67
SQSTM1-215ENST00000514093 TTC1Q99614 292 aa19.24■□□□□ 0.67
SQSTM1-215ENST00000514093 TSSK1BQ9BXA7 367 aa19.24■□□□□ 0.67
SQSTM1-215ENST00000514093 OSBPL8Q9BZF1 889 aa19.24■□□□□ 0.67
SQSTM1-215ENST00000514093 TGIF2Q9GZN2 237 aa19.24■□□□□ 0.67
SQSTM1-215ENST00000514093 R3HDM2Q9Y2K5 976 aaKnown RBP19.24■□□□□ 0.67
SQSTM1-215ENST00000514093 F8W8V4 182 aa19.23■□□□□ 0.67
SQSTM1-215ENST00000514093 ADAM10O14672 748 aa19.23■□□□□ 0.67
SQSTM1-215ENST00000514093 FANCGO15287 622 aa19.23■□□□□ 0.67
SQSTM1-215ENST00000514093 PRPF4O43172 522 aaKnown RBP eCLIP19.23■□□□□ 0.671e-8■■■■□ 20.7
SQSTM1-215ENST00000514093 FOXS1O43638 330 aa19.23■□□□□ 0.67
SQSTM1-215ENST00000514093 EEF1DP29692 281 aaKnown RBP19.23■□□□□ 0.67
SQSTM1-215ENST00000514093 CD96P40200 585 aa19.23■□□□□ 0.67
SQSTM1-215ENST00000514093 HADHBP55084 474 aaKnown RBP19.23■□□□□ 0.67
SQSTM1-215ENST00000514093 OR1C1Q15619 314 aa19.23■□□□□ 0.67
SQSTM1-215ENST00000514093 BTBD16Q32M84 506 aa19.23■□□□□ 0.67
SQSTM1-215ENST00000514093 LANCL3Q6ZV70 420 aa19.23■□□□□ 0.67
SQSTM1-215ENST00000514093 ZNF534Q76KX8 674 aa19.23■□□□□ 0.67
SQSTM1-215ENST00000514093 MMP21Q8N119 569 aa19.23■□□□□ 0.67
SQSTM1-215ENST00000514093 FAM71DQ8N9W8 422 aa19.23■□□□□ 0.67
SQSTM1-215ENST00000514093 OR52K1Q8NGK4 314 aa19.23■□□□□ 0.67
SQSTM1-215ENST00000514093 ZNF354BQ96LW1 612 aa19.23■□□□□ 0.67
SQSTM1-215ENST00000514093 TSR3Q9UJK0 312 aaKnown RBP19.23■□□□□ 0.67
SQSTM1-215ENST00000514093 PCDHGB6Q9Y5F9 930 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms