RNA–Protein interactions for RNA: ENST00000496030.1

APTX-233, Transcript of aprataxin, human

TSL 3

Gene APTX, Length 633 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-233	ENST00000496030		A0A0J9YY10	115 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	SMIM23	A6NLE4	172 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030		B4E171	279 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	TARM1	B6A8C7	271 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030		K7ENP7	123 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	KLK8	O60259	260 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	NRP2	O60462	931 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	KERA	O60938	352 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	RASSF9	O75901	435 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	DXO	O77932	396 aa	Known RBP	11.44	□□□□□ -0.58
APTX-233	ENST00000496030	ZBTB11	O95625	1053 aa	Predicted RBP	11.44	□□□□□ -0.58
APTX-233	ENST00000496030	PYGB	P11216	843 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	NPPB	P16860	134 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	CDH3	P22223	829 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	CSTF2	P33240	577 aa	Known RBP eCLIP	11.44	□□□□□ -0.58
APTX-233	ENST00000496030	GGT5	P36269	586 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	TSPAN7	P41732	249 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	SLC6A12	P48065	614 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	GLRB	P48167	497 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	HSD11B2	P80365	405 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	MC2R	Q01718	297 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	PRDX1	Q06830	199 aa	Known RBP	11.44	□□□□□ -0.58
APTX-233	ENST00000496030	SF1	Q15637	639 aa	Known RBP	11.44	□□□□□ -0.58
APTX-233	ENST00000496030	FAM83E	Q2M2I3	478 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	TECRL	Q5HYJ1	363 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	C3orf38	Q5JPI3	329 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	FCRL6	Q6DN72	434 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	INO80C	Q6PI98	192 aa	Predicted RBP	11.44	□□□□□ -0.58
APTX-233	ENST00000496030	IGF2-AS	Q6U949	168 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	KLHDC8A	Q8IYD2	350 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	RAB42	Q8N4Z0	105 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	STAG3L4	Q8TBR4	150 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	ACMSD	Q8TDX5	336 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	SLC46A1	Q96NT5	459 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	CMKLR1	Q99788	373 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	MIPEP	Q99797	713 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	ACAT2	Q9BWD1	397 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	FAM117A	Q9C073	453 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	ZMYND15	Q9H091	742 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	SLC6A20	Q9NP91	592 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	FBXO8	Q9NRD0	319 aa		11.44	□□□□□ -0.58
APTX-233	ENST00000496030	PTBP2	Q9UKA9	531 aa	Known RBP	11.44	□□□□□ -0.58
APTX-233	ENST00000496030	HEMK1	Q9Y5R4	338 aa	Predicted RBP	11.44	□□□□□ -0.58
APTX-233	ENST00000496030	TLDC2	A0PJX2	215 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	CCDC189	A1A4V9	331 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	ZNF839	A8K0R7	811 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	EFCAB7	A8K855	629 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	CDRT15L2	A8MXV6	281 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	GOLGA8R	I6L899	631 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	MAP2K7	O14733	419 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	TNFSF15	O95150	251 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	FKBP9	O95302	570 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	MSL3P1	P0C860	447 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	EBLN1	P0CF75	366 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	H2AFX	P16104	143 aa	Predicted RBP	11.43	□□□□□ -0.58
APTX-233	ENST00000496030	MAG	P20916	626 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	RPA3	P35244	121 aa	Predicted RBP	11.43	□□□□□ -0.58
APTX-233	ENST00000496030	GDF5	P43026	501 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	TBPL1	P62380	186 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	PTCHD3	Q3KNS1	767 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	ICE2	Q659A1	982 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	ZNF425	Q6IV72	752 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	FIGLA	Q6QHK4	219 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	CDHR3	Q6ZTQ4	885 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	DNAJC22	Q8N4W6	341 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	C19orf47	Q8N9M1	422 aa	Known RBP	11.43	□□□□□ -0.58
APTX-233	ENST00000496030	PDPR	Q8NCN5	879 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	ATL1	Q8WXF7	558 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	PYCR2	Q96C36	320 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	ZIM3	Q96PE6	472 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	TMEM79	Q9BSE2	394 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	DPH1	Q9BZG8	443 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	SPRY4	Q9C004	299 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	SYNPO2L	Q9H987	977 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	APMAP	Q9HDC9	416 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	PCMTD2	Q9NV79	361 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	TMEM216	Q9P0N5	145 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	PISD	Q9UG56	409 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	TAC3	Q9UHF0	121 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	RNF112	Q9ULX5	631 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	ASB1	Q9Y576	335 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	PCDHB11	Q9Y5F2	797 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	NBAS	A2RRP1	2371 aa		11.43	□□□□□ -0.58
APTX-233	ENST00000496030	MDC1	Q14676	2089 aa	Known RBP	11.43	□□□□□ -0.58
APTX-233	ENST00000496030	ANKRD17	O75179	2603 aa	Known RBP	11.42	□□□□□ -0.58
APTX-233	ENST00000496030	OR2A25	A4D2G3	310 aa		11.42	□□□□□ -0.58
APTX-233	ENST00000496030	NCF1B	A6NI72	391 aa	Predicted RBP	11.42	□□□□□ -0.58
APTX-233	ENST00000496030	NCF1C	A8MVU1	366 aa	Predicted RBP	11.42	□□□□□ -0.58
APTX-233	ENST00000496030	C9orf172	C9J069	976 aa		11.42	□□□□□ -0.58
APTX-233	ENST00000496030		H3BMH7	237 aa		11.42	□□□□□ -0.58
APTX-233	ENST00000496030	UBXN8	O00124	270 aa		11.42	□□□□□ -0.58
APTX-233	ENST00000496030	CTSV	O60911	334 aa		11.42	□□□□□ -0.58
APTX-233	ENST00000496030	ERLIN1	O75477	346 aa		11.42	□□□□□ -0.58
APTX-233	ENST00000496030	MT-ND3	P03897	115 aa		11.42	□□□□□ -0.58
APTX-233	ENST00000496030	CTSB	P07858	339 aa		11.42	□□□□□ -0.58
APTX-233	ENST00000496030	ANXA5	P08758	320 aa		11.42	□□□□□ -0.58
APTX-233	ENST00000496030	NCF1	P14598	390 aa	Predicted RBP	11.42	□□□□□ -0.58
APTX-233	ENST00000496030	HNMT	P50135	292 aa		11.42	□□□□□ -0.58
APTX-233	ENST00000496030	ERVPABLB-1	P60509	514 aa		11.42	□□□□□ -0.58
APTX-233	ENST00000496030	ABAT	P80404	500 aa		11.42	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms