RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 LINGO2Q7L985 606 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 SLITRK4Q8IW52 837 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 KLHL6Q8WZ60 621 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 FATE1Q969F0 183 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 NUS1Q96E22 293 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 MND1Q9BWT6 205 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 TLE6Q9H808 572 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 HMGB3O15347 200 aaKnown RBP16.03■□□□□ 0.16
COL7A1-210ENST00000487017 GSTM3P21266 225 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 ZCCHC12Q6PEW1 402 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 CEP68Q76N32 757 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 HSH2DQ96JZ2 352 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 LIN28AQ9H9Z2 209 aaKnown RBP16.03■□□□□ 0.16
COL7A1-210ENST00000487017 TMEM248Q9NWD8 314 aa16.03■□□□□ 0.16
COL7A1-210ENST00000487017 HMGN1P05114 100 aa16.02■□□□□ 0.16
COL7A1-210ENST00000487017 H1F0P07305 194 aaKnown RBP16.02■□□□□ 0.16
COL7A1-210ENST00000487017 ACADLP28330 430 aa16.02■□□□□ 0.16
COL7A1-210ENST00000487017 ACSL1P33121 698 aa16.02■□□□□ 0.16
COL7A1-210ENST00000487017 MPIP34949 423 aa16.02■□□□□ 0.16
COL7A1-210ENST00000487017 TAS1R3Q7RTX0 852 aa16.02■□□□□ 0.16
COL7A1-210ENST00000487017 LRCH3Q96II8 777 aa16.02■□□□□ 0.16
COL7A1-210ENST00000487017 TCF7L1Q9HCS4 588 aa16.02■□□□□ 0.16
COL7A1-210ENST00000487017 HEBP2Q9Y5Z4 205 aa16.02■□□□□ 0.16
COL7A1-210ENST00000487017 DUXAA6NLW8 204 aa16.02■□□□□ 0.16
COL7A1-210ENST00000487017 GRK6P43250 576 aa16.02■□□□□ 0.16
COL7A1-210ENST00000487017 ILF3Q12906 894 aaKnown RBP eCLIP16.02■□□□□ 0.16
COL7A1-210ENST00000487017 KIAA1161Q6NSJ0 714 aa16.02■□□□□ 0.16
COL7A1-210ENST00000487017 TUBA3EQ6PEY2 450 aa16.02■□□□□ 0.16
COL7A1-210ENST00000487017 SUN5Q8TC36 379 aa16.02■□□□□ 0.16
COL7A1-210ENST00000487017 ING5Q8WYH8 240 aa16.02■□□□□ 0.16
COL7A1-210ENST00000487017 RIOK2Q9BVS4 552 aaKnown RBP16.02■□□□□ 0.16
COL7A1-210ENST00000487017 TRIM2Q9C040 744 aa16.02■□□□□ 0.16
COL7A1-210ENST00000487017 PHF24Q9UPV7 400 aa16.02■□□□□ 0.16
COL7A1-210ENST00000487017 MID1O15344 667 aa16.02■□□□□ 0.16
COL7A1-210ENST00000487017 C8AP07357 584 aa16.02■□□□□ 0.16
COL7A1-210ENST00000487017 ATP1B2P14415 290 aaPredicted RBP16.02■□□□□ 0.16
COL7A1-210ENST00000487017 DCDC1P59894 354 aa16.02■□□□□ 0.16
COL7A1-210ENST00000487017 MS4A13Q5J8X5 152 aa16.02■□□□□ 0.16
COL7A1-210ENST00000487017 ANKHQ9HCJ1 492 aa16.02■□□□□ 0.16
COL7A1-210ENST00000487017 FBRSL1Q9HCM7 1045 aaKnown RBP16.02■□□□□ 0.16
COL7A1-210ENST00000487017 TM9SF3Q9HD45 589 aa16.02■□□□□ 0.16
COL7A1-210ENST00000487017 FAM120CQ9NX05 1096 aaKnown RBP16.02■□□□□ 0.16
COL7A1-210ENST00000487017 PCDHGB7Q9Y5F8 929 aa16.02■□□□□ 0.16
COL7A1-210ENST00000487017 PSMD9O00233 223 aa16.02■□□□□ 0.15
COL7A1-210ENST00000487017 TSTQ16762 297 aaKnown RBP16.02■□□□□ 0.15
COL7A1-210ENST00000487017 SPANXN4Q5MJ08 99 aa16.02■□□□□ 0.15
COL7A1-210ENST00000487017 THOC6Q86W42 341 aaKnown RBP16.02■□□□□ 0.15
COL7A1-210ENST00000487017 ZNF420Q8TAQ5 688 aaPredicted RBP16.02■□□□□ 0.15
COL7A1-210ENST00000487017 PMEPA1Q969W9 287 aa16.02■□□□□ 0.15
COL7A1-210ENST00000487017 ERMAPQ96PL5 475 aaPredicted RBP16.02■□□□□ 0.15
COL7A1-210ENST00000487017 ZSCAN5AQ9BUG6 496 aa16.02■□□□□ 0.15
COL7A1-210ENST00000487017 ALDOAP04075 364 aaKnown RBP16.02■□□□□ 0.15
COL7A1-210ENST00000487017 SERINC3Q13530 473 aa16.02■□□□□ 0.15
COL7A1-210ENST00000487017 DBF4BQ8NFT6 615 aa16.02■□□□□ 0.15
COL7A1-210ENST00000487017 OR2L5Q8NG80 312 aa16.02■□□□□ 0.15
COL7A1-210ENST00000487017 CCM2Q9BSQ5 444 aa16.02■□□□□ 0.15
COL7A1-210ENST00000487017 SRMSQ9H3Y6 488 aa16.02■□□□□ 0.15
COL7A1-210ENST00000487017 DNAJC5Q9H3Z4 198 aa16.02■□□□□ 0.15
COL7A1-210ENST00000487017 NLE1Q9NVX2 485 aaPredicted RBP16.02■□□□□ 0.15
COL7A1-210ENST00000487017 GIMAP2Q9UG22 337 aa16.02■□□□□ 0.15
COL7A1-210ENST00000487017 FKBP7Q9Y680 259 aa16.02■□□□□ 0.15
COL7A1-210ENST00000487017 GLTPD2A6NH11 291 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 KDELR3O43731 214 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 ACVR2AP27037 513 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 NUDT6P53370 316 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 PRAMEF14Q5SWL7 426 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 PRAMEF13Q5VWM6 474 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 SLC22A16Q86VW1 577 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 PKP4Q99569 1192 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 BAIAP2Q9UQB8 552 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 S100A6P06703 90 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 GDF5P43026 501 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 KCNQ1P51787 676 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 PPP3R1P63098 170 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 CDK6Q00534 326 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 WSCD2Q2TBF2 565 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 MCEMP1Q8IX19 187 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 FCRL3Q96P31 734 aaPredicted RBP16.01■□□□□ 0.15
COL7A1-210ENST00000487017 RAB2AP61019 212 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 ERVK-21P61565 698 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 IQCHQ86VS3 1027 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 NXPE1Q8N323 547 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 NFKBIDQ8NI38 313 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 GPR151Q8TDV0 419 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 TSPEARQ8WU66 669 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 RGMAQ96B86 450 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 CMTM7Q96FZ5 175 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 TBX5Q99593 518 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 IL36AQ9UHA7 158 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 PPP1R3AQ16821 1122 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 UCK2Q9BZX2 261 aa16.01■□□□□ 0.15
COL7A1-210ENST00000487017 AKAP8O43823 692 aaKnown RBP16■□□□□ 0.15
COL7A1-210ENST00000487017 CLDN7O95471 211 aa16■□□□□ 0.15
COL7A1-210ENST00000487017 BCHEP06276 602 aa16■□□□□ 0.15
COL7A1-210ENST00000487017 KLK1P06870 262 aa16■□□□□ 0.15
COL7A1-210ENST00000487017 GGT5P36269 586 aa16■□□□□ 0.15
COL7A1-210ENST00000487017 SLC15A1P46059 708 aa16■□□□□ 0.15
COL7A1-210ENST00000487017 TGFBIQ15582 683 aa16■□□□□ 0.15
COL7A1-210ENST00000487017 CLEC12AQ5QGZ9 265 aa16■□□□□ 0.15
COL7A1-210ENST00000487017 NIPAL1Q6NVV3 410 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms