RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 TRUB1Q8WWH5 349 aaKnown RBP10.73□□□□□ -0.69
HDAC6-228ENST00000486227 RNF11Q9Y3C5 154 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 PRKAB1Q9Y478 270 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 KNL1Q8NG31 2342 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 CXCR6O00574 342 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 CLDN4O14493 209 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 ZNF182P17025 639 aaPredicted RBP10.73□□□□□ -0.69
HDAC6-228ENST00000486227 MYL12AP19105 171 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 BDKRB1P46663 353 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 FOXM1Q08050 763 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 SEMA3AQ14563 771 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 TAZQ16635 292 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 ALG11Q2TAA5 492 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 TBC1D25Q3MII6 688 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 TMEM25Q86YD3 366 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 TTC29Q8NA56 475 aaPredicted RBP10.73□□□□□ -0.69
HDAC6-228ENST00000486227 KLHDC9Q8NEP7 349 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 GAB3Q8WWW8 586 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 CDCA3Q99618 268 aaPredicted RBP10.73□□□□□ -0.69
HDAC6-228ENST00000486227 DUSP26Q9BV47 211 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 FNDC11Q9BVV2 318 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 LRRC3Q9BY71 257 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 ITM2CQ9NQX7 267 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 SLC2A4RGQ9NR83 387 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 SPATA7Q9P0W8 599 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 ATP6V1HQ9UI12 483 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 LYVE1Q9Y5Y7 322 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 STX16O14662 325 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 ERN1O75460 977 aaKnown RBP10.73□□□□□ -0.69
HDAC6-228ENST00000486227 SLC35G6P0C7Q6 338 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 MYCLP1P12525 358 aaPredicted RBP10.73□□□□□ -0.69
HDAC6-228ENST00000486227 HOXD8P13378 290 aaPredicted RBP10.73□□□□□ -0.69
HDAC6-228ENST00000486227 MAGEA6P43360 314 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 YAP1P46937 504 aaKnown RBP10.73□□□□□ -0.69
HDAC6-228ENST00000486227 CLCNKAP51800 687 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 PNLIPRP1P54315 467 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 SMIM11AP58511 58 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 RELAQ04206 551 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 CEACAM7Q14002 265 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 MINDY4Q4G0A6 757 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 VN1R5Q7Z5H4 357 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 RASSF5Q8WWW0 418 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 ZNF641Q96N77 438 aaPredicted RBP10.73□□□□□ -0.69
HDAC6-228ENST00000486227 TUBA1CQ9BQE3 449 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 POPDC3Q9HBV1 291 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 SEC14L3Q9UDX4 400 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 FBXW2Q9UKT8 454 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 CPED1A4D0V7 1026 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 HEPACAM2A8MVW5 462 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 SDHDO14521 159 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 MYL12BO14950 172 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 PCDH7O60245 1069 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 G6PDP11413 515 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 IGFBP5P24593 272 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 RPL10P27635 214 aaKnown RBP10.73□□□□□ -0.69
HDAC6-228ENST00000486227 CD70P32970 193 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 ETV3P41162 512 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 DIO3P55073 304 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 CASP9P55211 416 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 HSPB3Q12988 150 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 DSC3Q14574 896 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 CTC1Q2NKJ3 1217 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 UAP1L1Q3KQV9 507 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 GCNT6Q5T4J0 391 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 TMEM164Q5U3C3 297 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 SLC2A7Q6PXP3 512 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 TCEAL8Q8IYN2 117 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 FAM46DQ8NEK8 389 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 KHSRPQ92945 711 aaKnown RBP eCLIP10.73□□□□□ -0.69
HDAC6-228ENST00000486227 PCBD2Q9H0N5 130 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 PDP1Q9P0J1 537 aaPredicted RBP10.73□□□□□ -0.69
HDAC6-228ENST00000486227 PEX16Q9Y5Y5 336 aa10.73□□□□□ -0.69
HDAC6-228ENST00000486227 THSD7AQ9UPZ6 1657 aa10.72□□□□□ -0.69
HDAC6-228ENST00000486227 A0A0U1RQS6 177 aa10.72□□□□□ -0.69
HDAC6-228ENST00000486227 AP3D1O14617 1153 aa10.72□□□□□ -0.69
HDAC6-228ENST00000486227 CBSLP0DN79 551 aa10.72□□□□□ -0.69
HDAC6-228ENST00000486227 VARSP26640 1264 aaKnown RBP10.72□□□□□ -0.69
HDAC6-228ENST00000486227 NDUFS1P28331 727 aa10.72□□□□□ -0.69
HDAC6-228ENST00000486227 GCAP28676 217 aa10.72□□□□□ -0.69
HDAC6-228ENST00000486227 CBSP35520 551 aa10.72□□□□□ -0.69
HDAC6-228ENST00000486227 BLVRAP53004 296 aa10.72□□□□□ -0.69
HDAC6-228ENST00000486227 SUZ12Q15022 739 aaKnown RBP10.72□□□□□ -0.69
HDAC6-228ENST00000486227 AMZ1Q400G9 498 aa10.72□□□□□ -0.69
HDAC6-228ENST00000486227 AGTRAPQ6RW13 159 aa10.72□□□□□ -0.69
HDAC6-228ENST00000486227 FAM129CQ86XR2 697 aa10.72□□□□□ -0.69
HDAC6-228ENST00000486227 ARMC8Q8IUR7 673 aa10.72□□□□□ -0.69
HDAC6-228ENST00000486227 SLC39A11Q8N1S5 342 aa10.72□□□□□ -0.69
HDAC6-228ENST00000486227 AVL9Q8NBF6 648 aa10.72□□□□□ -0.69
HDAC6-228ENST00000486227 OR52J3Q8NH60 311 aa10.72□□□□□ -0.69
HDAC6-228ENST00000486227 ADAMTS15Q8TE58 950 aa10.72□□□□□ -0.69
HDAC6-228ENST00000486227 CGREF1Q99674 301 aa10.72□□□□□ -0.69
HDAC6-228ENST00000486227 DHRS4Q9BTZ2 278 aa10.72□□□□□ -0.69
HDAC6-228ENST00000486227 SEMA3GQ9NS98 782 aa10.72□□□□□ -0.69
HDAC6-228ENST00000486227 ACTR3BQ9P1U1 418 aa10.72□□□□□ -0.69
HDAC6-228ENST00000486227 TMEM98Q9Y2Y6 226 aa10.72□□□□□ -0.69
HDAC6-228ENST00000486227 SPO11Q9Y5K1 396 aa10.72□□□□□ -0.69
HDAC6-228ENST00000486227 FUOMA2VDF0 154 aa10.72□□□□□ -0.69
HDAC6-228ENST00000486227 PSMD11O00231 422 aa10.72□□□□□ -0.69
HDAC6-228ENST00000486227 TBX1O43435 398 aa10.72□□□□□ -0.69
HDAC6-228ENST00000486227 IGFBP6P24592 240 aaPredicted RBP10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms