RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 ARSFP54793 590 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 RAB10P61026 200 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 ATP6V0D1P61421 351 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 SKP1P63208 163 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 ABATP80404 500 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 CFHR1Q03591 330 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 NAE1Q13564 534 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 UBAP2LQ14157 1087 aaKnown RBP7.74□□□□□ -1.17
USP40-216ENST00000485943 CSHL1Q14406 222 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 GRM7Q14831 915 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 CYP2A13Q16696 494 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 FAM83EQ2M2I3 478 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 FAM214AQ32MH5 1076 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.74□□□□□ -1.17
USP40-216ENST00000485943 MROH9Q5TGP6 573 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 FIGLAQ6QHK4 219 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 XKR5Q6UX68 686 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 TRMT10CQ7L0Y3 403 aaKnown RBP7.74□□□□□ -1.17
USP40-216ENST00000485943 GPR155Q7Z3F1 870 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 CCDC91Q7Z6B0 441 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 VASH2Q86V25 355 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 ZC3HC1Q86WB0 502 aaKnown RBP7.74□□□□□ -1.17
USP40-216ENST00000485943 GPSM1Q86YR5 675 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 AGGF1Q8N302 714 aaeCLIP7.74□□□□□ -1.17
USP40-216ENST00000485943 D2HGDHQ8N465 521 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 SNX31Q8N9S9 440 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 GALNT6Q8NCL4 622 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 PPFIBP2Q8ND30 876 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 ZUFSPQ96AP4 578 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 RNF31Q96EP0 1072 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 SLC41A2Q96JW4 573 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 CABS1Q96KC9 395 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 FCRL4Q96PJ5 515 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 TRAPPC9Q96Q05 1148 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 PKP4Q99569 1192 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 DPH7Q9BTV6 452 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 VPS11Q9H270 941 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 CDC42EP4Q9H3Q1 356 aaKnown RBP7.74□□□□□ -1.17
USP40-216ENST00000485943 NMRAL1Q9HBL8 299 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 POPDC3Q9HBV1 291 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 LRRC4CQ9HCJ2 640 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 NEUROD4Q9HD90 331 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 APMAPQ9HDC9 416 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 PDP2Q9P2J9 529 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 SNX7Q9UNH6 387 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 BTRCQ9Y297 605 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 ACOT9Q9Y305 439 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 PCDHGA3Q9Y5H0 932 aa7.74□□□□□ -1.17
USP40-216ENST00000485943 TPRP12270 2363 aaKnown RBP7.74□□□□□ -1.17
USP40-216ENST00000485943 BPTFQ12830 3046 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 A0A087X1B8 175 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 IQANK1A0A1B0GTG1 560 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 PMS2P1A4D2B8 440 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 SLC35F4A4IF30 521 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 NPEPPSL1A6NEC2 478 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 URADA6NGE7 173 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 EIF1AYO14602 144 aaKnown RBP7.73□□□□□ -1.17
USP40-216ENST00000485943 ZSCAN9O15535 394 aaPredicted RBP7.73□□□□□ -1.17
USP40-216ENST00000485943 PHGDHO43175 533 aaKnown RBP7.73□□□□□ -1.17
USP40-216ENST00000485943 PIAS1O75925 651 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 WDR47O94967 919 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 SLC16A8O95907 504 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 LTA4HP09960 611 aaKnown RBP7.73□□□□□ -1.17
USP40-216ENST00000485943 SLC35G6P0C7Q6 338 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 CCDC166P0CW27 439 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 PRKAR1AP10644 381 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 GFAPP14136 432 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 ZNF37AP17032 561 aaPredicted RBP7.73□□□□□ -1.17
USP40-216ENST00000485943 FDXRP22570 491 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 CNTFP26441 200 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 HPDP32754 393 aaPredicted RBP7.73□□□□□ -1.17
USP40-216ENST00000485943 CDKN2DP55273 166 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 VSX2P58304 361 aaPredicted RBP7.73□□□□□ -1.17
USP40-216ENST00000485943 ABHD18Q0P651 414 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 ZNF460Q14592 562 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 LAPTM4AQ15012 233 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 COL28A1Q2UY09 1125 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 MFSD4BQ5TF39 518 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 IRAK1BP1Q5VVH5 260 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 MLIPQ5VWP3 458 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 ZNF549Q6P9A3 640 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 AGTRAPQ6RW13 159 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 MYLK4Q86YV6 388 aaPredicted RBP7.73□□□□□ -1.17
USP40-216ENST00000485943 TCAIMQ8N3R3 496 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 ASB11Q8WXH4 323 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 CCT6BQ92526 530 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 ATP6V1E2Q96A05 226 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 OR2A14Q96R47 310 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 ZFYVE21Q9BQ24 234 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 IQCGQ9H095 443 aaKnown RBP7.73□□□□□ -1.17
USP40-216ENST00000485943 ATG10Q9H0Y0 220 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 CAB39LQ9H9S4 337 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 SPHK1Q9NYA1 384 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 MOCS1Q9NZB8 636 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 NINJ2Q9NZG7 142 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 IFT80Q9P2H3 777 aaPredicted RBP7.73□□□□□ -1.17
USP40-216ENST00000485943 ANKMY1Q9P2S6 941 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 GALPQ9UBC7 116 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 CDC14AQ9UNH5 594 aa7.73□□□□□ -1.17
USP40-216ENST00000485943 CDYLQ9Y232 598 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms