RNA–Protein interactions for RNA: ENST00000483506.1

HDAC6-225, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-225ENST00000483506 PTPN4P29074 926 aa17.24■□□□□ 0.35
HDAC6-225ENST00000483506 PHBP35232 272 aa17.24■□□□□ 0.35
HDAC6-225ENST00000483506 ARSFP54793 590 aa17.24■□□□□ 0.35
HDAC6-225ENST00000483506 SLC12A2P55011 1212 aa17.24■□□□□ 0.35
HDAC6-225ENST00000483506 CYP4F2P78329 520 aa17.24■□□□□ 0.35
HDAC6-225ENST00000483506 CDKL1Q00532 357 aa17.24■□□□□ 0.35
HDAC6-225ENST00000483506 USP10Q14694 798 aaKnown RBP17.24■□□□□ 0.35
HDAC6-225ENST00000483506 EFTUD2Q15029 972 aaKnown RBP eCLIP17.24■□□□□ 0.35
HDAC6-225ENST00000483506 SOWAHCQ53LP3 525 aaPredicted RBP17.24■□□□□ 0.35
HDAC6-225ENST00000483506 PRAMEF13Q5VWM6 474 aa17.24■□□□□ 0.35
HDAC6-225ENST00000483506 LCN10Q6JVE6 187 aa17.24■□□□□ 0.35
HDAC6-225ENST00000483506 FBXO42Q6P3S6 717 aa17.24■□□□□ 0.35
HDAC6-225ENST00000483506 ADAMTSL2Q86TH1 951 aa17.24■□□□□ 0.35
HDAC6-225ENST00000483506 ATL1Q8WXF7 558 aa17.24■□□□□ 0.35
HDAC6-225ENST00000483506 UBXN10Q96LJ8 280 aa17.24■□□□□ 0.35
HDAC6-225ENST00000483506 ZFYVE21Q9BQ24 234 aa17.24■□□□□ 0.35
HDAC6-225ENST00000483506 NLNQ9BYT8 704 aa17.24■□□□□ 0.35
HDAC6-225ENST00000483506 CDC42EP4Q9H3Q1 356 aaKnown RBP17.24■□□□□ 0.35
HDAC6-225ENST00000483506 ACTL8Q9H568 366 aa17.24■□□□□ 0.35
HDAC6-225ENST00000483506 CAB39LQ9H9S4 337 aa17.24■□□□□ 0.35
HDAC6-225ENST00000483506 SNX7Q9UNH6 387 aa17.24■□□□□ 0.35
HDAC6-225ENST00000483506 MDC1Q14676 2089 aaKnown RBP17.24■□□□□ 0.35
HDAC6-225ENST00000483506 NPEPPSL1A6NEC2 478 aa17.23■□□□□ 0.35
HDAC6-225ENST00000483506 CDC7O00311 574 aa17.23■□□□□ 0.35
HDAC6-225ENST00000483506 CREG1O75629 220 aa17.23■□□□□ 0.35
HDAC6-225ENST00000483506 FAM155BO75949 473 aa17.23■□□□□ 0.35
HDAC6-225ENST00000483506 STMN1P16949 149 aa17.23■□□□□ 0.35
HDAC6-225ENST00000483506 EMP3P54852 163 aa17.23■□□□□ 0.35
HDAC6-225ENST00000483506 RAB10P61026 200 aa17.23■□□□□ 0.35
HDAC6-225ENST00000483506 TSTA3Q13630 321 aaPredicted RBP17.23■□□□□ 0.35
HDAC6-225ENST00000483506 GRM7Q14831 915 aa17.23■□□□□ 0.35
HDAC6-225ENST00000483506 UBAP2Q5T6F2 1119 aaKnown RBP17.23■□□□□ 0.35
HDAC6-225ENST00000483506 FRMPD2BQ6IN97 320 aa17.23■□□□□ 0.35
HDAC6-225ENST00000483506 LCTLQ6UWM7 567 aa17.23■□□□□ 0.35
HDAC6-225ENST00000483506 IFT20Q8IY31 132 aa17.23■□□□□ 0.35
HDAC6-225ENST00000483506 RUFY1Q96T51 708 aa17.23■□□□□ 0.35
HDAC6-225ENST00000483506 CYTH2Q99418 400 aa17.23■□□□□ 0.35
HDAC6-225ENST00000483506 C17orf62Q9BQA9 187 aa17.23■□□□□ 0.35
HDAC6-225ENST00000483506 NDC1Q9BTX1 674 aa17.23■□□□□ 0.35
HDAC6-225ENST00000483506 SLC7A5P2Q9GIP4 190 aa17.23■□□□□ 0.35
HDAC6-225ENST00000483506 CUEDC1Q9NWM3 386 aaPredicted RBP17.23■□□□□ 0.35
HDAC6-225ENST00000483506 FARSAQ9Y285 508 aaKnown RBP17.23■□□□□ 0.35
HDAC6-225ENST00000483506 OARD1Q9Y530 152 aa17.23■□□□□ 0.35
HDAC6-225ENST00000483506 PIEZO2Q9H5I5 2752 aa17.23■□□□□ 0.35
HDAC6-225ENST00000483506 LOC105369274A0A096LPK9 316 aa17.22■□□□□ 0.35
HDAC6-225ENST00000483506 LOC102723532A0A0G2JNH3 316 aa17.22■□□□□ 0.35
HDAC6-225ENST00000483506 A0A0J9YVX5 310 aa17.22■□□□□ 0.35
HDAC6-225ENST00000483506 PABPN1LA6NDY0 278 aaKnown RBP17.22■□□□□ 0.35
HDAC6-225ENST00000483506 PHGDHO43175 533 aaKnown RBP17.22■□□□□ 0.35
HDAC6-225ENST00000483506 AGXTP21549 392 aa17.22■□□□□ 0.35
HDAC6-225ENST00000483506 CSRP3P50461 194 aa17.22■□□□□ 0.35
HDAC6-225ENST00000483506 RPS15P62841 145 aaKnown RBP17.22■□□□□ 0.35
HDAC6-225ENST00000483506 NAE1Q13564 534 aa17.22■□□□□ 0.35
HDAC6-225ENST00000483506 NCF4Q15080 339 aa17.22■□□□□ 0.35
HDAC6-225ENST00000483506 TBR1Q16650 682 aa17.22■□□□□ 0.35
HDAC6-225ENST00000483506 PRTGQ2VWP7 1150 aa17.22■□□□□ 0.35
HDAC6-225ENST00000483506 PTCHD3Q3KNS1 767 aa17.22■□□□□ 0.35
HDAC6-225ENST00000483506 LINC00303Q3SY05 128 aa17.22■□□□□ 0.35
HDAC6-225ENST00000483506 THEMIS2Q5TEJ8 643 aa17.22■□□□□ 0.35
HDAC6-225ENST00000483506 CAPN13Q6MZZ7 669 aaPredicted RBP17.22■□□□□ 0.35
HDAC6-225ENST00000483506 SYVN1Q86TM6 617 aa17.22■□□□□ 0.35
HDAC6-225ENST00000483506 OR4N4Q8N0Y3 316 aa17.22■□□□□ 0.35
HDAC6-225ENST00000483506 TTC29Q8NA56 475 aaPredicted RBP17.22■□□□□ 0.35
HDAC6-225ENST00000483506 OR2A5Q96R48 311 aa17.22■□□□□ 0.35
HDAC6-225ENST00000483506 DHRS4Q9BTZ2 278 aa17.22■□□□□ 0.35
HDAC6-225ENST00000483506 ATG10Q9H0Y0 220 aa17.22■□□□□ 0.35
HDAC6-225ENST00000483506 SYNPO2LQ9H987 977 aa17.22■□□□□ 0.35
HDAC6-225ENST00000483506 TMEM184CQ9NVA4 438 aa17.22■□□□□ 0.35
HDAC6-225ENST00000483506 IRAK4Q9NWZ3 460 aa17.22■□□□□ 0.35
HDAC6-225ENST00000483506 DHCR7Q9UBM7 475 aaKnown RBP17.22■□□□□ 0.35
HDAC6-225ENST00000483506 CTNNAL1Q9UBT7 734 aa17.22■□□□□ 0.35
HDAC6-225ENST00000483506 A0A1B0GX78 115 aa17.21■□□□□ 0.35
HDAC6-225ENST00000483506 HMX2A2RU54 273 aa17.21■□□□□ 0.35
HDAC6-225ENST00000483506 H0YGG7 62 aa17.21■□□□□ 0.35
HDAC6-225ENST00000483506 DSCR3O14972 297 aa17.21■□□□□ 0.35
HDAC6-225ENST00000483506 KATNA1O75449 491 aa17.21■□□□□ 0.35
HDAC6-225ENST00000483506 CD1DP15813 335 aa17.21■□□□□ 0.35
HDAC6-225ENST00000483506 NPPBP16860 134 aa17.21■□□□□ 0.35
HDAC6-225ENST00000483506 ITGAXP20702 1163 aa17.21■□□□□ 0.35
HDAC6-225ENST00000483506 SLC26A3P40879 764 aa17.21■□□□□ 0.35
HDAC6-225ENST00000483506 VSX2P58304 361 aaPredicted RBP17.21■□□□□ 0.35
HDAC6-225ENST00000483506 ARF3P61204 181 aaPredicted RBP17.21■□□□□ 0.35
HDAC6-225ENST00000483506 ATP6V0D1P61421 351 aa17.21■□□□□ 0.35
HDAC6-225ENST00000483506 DCDP81605 110 aaKnown RBP17.21■□□□□ 0.35
HDAC6-225ENST00000483506 SLMAPQ14BN4 828 aa17.21■□□□□ 0.35
HDAC6-225ENST00000483506 TSNQ15631 228 aaKnown RBP17.21■□□□□ 0.35
HDAC6-225ENST00000483506 WASHC2DQ5SRD0 308 aa17.21■□□□□ 0.35
HDAC6-225ENST00000483506 CCDC91Q7Z6B0 441 aa17.21■□□□□ 0.35
HDAC6-225ENST00000483506 ENDOVQ8N8Q3 282 aaKnown RBP17.21■□□□□ 0.35
HDAC6-225ENST00000483506 LRRN4CLQ8ND94 238 aa17.21■□□□□ 0.35
HDAC6-225ENST00000483506 MED8Q96G25 268 aa17.21■□□□□ 0.35
HDAC6-225ENST00000483506 HAUS8Q9BT25 410 aa17.21■□□□□ 0.35
HDAC6-225ENST00000483506 CUTCQ9NTM9 273 aa17.21■□□□□ 0.35
HDAC6-225ENST00000483506 TXLNGQ9NUQ3 528 aa17.21■□□□□ 0.35
HDAC6-225ENST00000483506 NFU1Q9UMS0 254 aa17.21■□□□□ 0.35
HDAC6-225ENST00000483506 SH2B3Q9UQQ2 575 aa17.21■□□□□ 0.35
HDAC6-225ENST00000483506 KCNE1BA0A087WTH5 132 aa17.2■□□□□ 0.34
HDAC6-225ENST00000483506 C9J4A7 227 aa17.2■□□□□ 0.34
HDAC6-225ENST00000483506 H7BY64 318 aa17.2■□□□□ 0.34
HDAC6-225ENST00000483506 HAT1O14929 419 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms