RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 SOWAHCQ53LP3 525 aaPredicted RBP13.16□□□□□ -0.3
USP42-206ENST00000479544 RUNDC3AQ59EK9 446 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 CLEC12AQ5QGZ9 265 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 MMAAQ8IVH4 418 aaKnown RBP13.16□□□□□ -0.3
USP42-206ENST00000479544 ZBTB2Q8N680 514 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 CELF2-AS1Q8N7Q2 184 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 HJURPQ8NCD3 748 aaPredicted RBP13.16□□□□□ -0.3
USP42-206ENST00000479544 PCNPQ8WW12 178 aaKnown RBP13.16□□□□□ -0.3
USP42-206ENST00000479544 IPCEF1Q8WWN9 437 aaPredicted RBP13.16□□□□□ -0.3
USP42-206ENST00000479544 ZNF599Q96NL3 588 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 TBX5Q99593 518 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 CCDC59Q9P031 241 aaKnown RBP13.16□□□□□ -0.3
USP42-206ENST00000479544 ADAMTS7Q9UKP4 1686 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 CPSF4LA6NMK7 179 aaKnown RBP13.16□□□□□ -0.3
USP42-206ENST00000479544 ALDH2P05091 517 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 FCER2P06734 321 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 SLC2A2P11168 524 aaPredicted RBP13.16□□□□□ -0.3
USP42-206ENST00000479544 RPL6Q02878 288 aaKnown RBP13.16□□□□□ -0.3
USP42-206ENST00000479544 MTA1Q13330 715 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 LIPKQ5VXJ0 399 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 MAL2Q969L2 176 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 PPCDCQ96CD2 204 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 FRMD6Q96NE9 622 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 MGLLQ99685 303 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 AREL1O15033 823 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 DHFRP00374 187 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 CATP04040 527 aaKnown RBP13.16□□□□□ -0.3
USP42-206ENST00000479544 PFKLP17858 780 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 OGNP20774 298 aaKnown RBP13.16□□□□□ -0.3
USP42-206ENST00000479544 MYL9P24844 172 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 HCAR3P49019 387 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 CRYBB1P53674 252 aaPredicted RBP13.16□□□□□ -0.3
USP42-206ENST00000479544 TUBA1BP68363 451 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 MVKQ03426 396 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 LGALS3BPQ08380 585 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 LETMD1Q6P1Q0 360 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 RANBP10Q6VN20 620 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 CYP4V2Q6ZWL3 525 aaPredicted RBP13.16□□□□□ -0.3
USP42-206ENST00000479544 TUBA1AQ71U36 451 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 FEVQ99581 238 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 FNDC11Q9BVV2 318 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 RBM38Q9H0Z9 239 aaKnown RBP13.16□□□□□ -0.3
USP42-206ENST00000479544 VRTNQ9H8Y1 702 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 C12orf4Q9NQ89 552 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 PCDHGB6Q9Y5F9 930 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 CHURC1-FNTBB4DL54 471 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 AP3D1O14617 1153 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 SLC28A2O43868 658 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 EEDO75530 441 aaKnown RBP13.16□□□□□ -0.3
USP42-206ENST00000479544 IFNW1P05000 195 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 CENPAP49450 140 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 DCDC1P59894 354 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 SMAD3P84022 425 aaKnown RBP13.16□□□□□ -0.3
USP42-206ENST00000479544 CSTF1Q05048 431 aaKnown RBP13.16□□□□□ -0.3
USP42-206ENST00000479544 PSAPL1Q6NUJ1 521 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 FAM180BQ6P0A1 224 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 HACD2Q6Y1H2 254 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 DPP10Q8N608 796 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 GLB1L3Q8NCI6 653 aaPredicted RBP13.16□□□□□ -0.3
USP42-206ENST00000479544 BRD9Q9H8M2 597 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 MKLN1Q9UL63 735 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 RIMKLBQ9ULI2 386 aa13.16□□□□□ -0.3
USP42-206ENST00000479544 TRAV6A0A075B6T7 132 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 A0A0G2JN53 185 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 SGTAO43765 313 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 CH25HO95992 272 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 ESR1P03372 595 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 SCNN1AP37088 669 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 ATP4BP51164 291 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 NPRL3Q12980 569 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 TARDBPQ13148 414 aaKnown RBP eCLIP13.15□□□□□ -0.34e-6■■□□□ 11.5
USP42-206ENST00000479544 SUZ12Q15022 739 aaKnown RBP13.15□□□□□ -0.3
USP42-206ENST00000479544 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.15□□□□□ -0.3
USP42-206ENST00000479544 RASSF6Q6ZTQ3 369 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 FCGR1BQ92637 280 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 DUSP26Q9BV47 211 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 ANKRA2Q9H9E1 313 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 TPT1P8Q9HAU6 139 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 RAD18Q9NS91 495 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 SEC14L3Q9UDX4 400 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 ANGPT4Q9Y264 503 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 TRPV2Q9Y5S1 764 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 ZNF831Q5JPB2 1677 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 GLYATL1P3A0A0U1RQE8 302 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 SLITRK5O94991 958 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 GKP32189 559 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 ANKS3Q6ZW76 656 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 CYP4Z2PQ8N1L4 340 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 ZFP41Q8N8Y5 198 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 MSANTD3Q96H12 275 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 C8orf48Q96LL4 319 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 BBS4Q96RK4 519 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 MCOLN1Q9GZU1 580 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 EQTNQ9NQ60 294 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 SEMA3GQ9NS98 782 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 ANKMY1Q9P2S6 941 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 H3BM21 787 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 SLC30A4O14863 429 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 NUAK1O60285 661 aa13.15□□□□□ -0.3
USP42-206ENST00000479544 UPK1BO75841 260 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms