RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 ZNF839A8K0R7 811 aa16.67■□□□□ 0.26
COL7A1-208ENST00000470076 MAP2K7O14733 419 aa16.67■□□□□ 0.26
COL7A1-208ENST00000470076 PRPF4O43172 522 aaKnown RBP eCLIP16.67■□□□□ 0.26
COL7A1-208ENST00000470076 HPP00738 406 aa16.67■□□□□ 0.26
COL7A1-208ENST00000470076 CATP04040 527 aaKnown RBP16.67■□□□□ 0.26
COL7A1-208ENST00000470076 FBLP22087 321 aaKnown RBP16.67■□□□□ 0.26
COL7A1-208ENST00000470076 RPA3P35244 121 aaPredicted RBP16.67■□□□□ 0.26
COL7A1-208ENST00000470076 YBX1P67809 324 aaKnown RBP16.67■□□□□ 0.26
COL7A1-208ENST00000470076 KLHL38Q2WGJ6 581 aa16.67■□□□□ 0.26
COL7A1-208ENST00000470076 ACSBG2Q5FVE4 666 aa16.67■□□□□ 0.26
COL7A1-208ENST00000470076 B3GNTL1Q67FW5 361 aaPredicted RBP16.67■□□□□ 0.26
COL7A1-208ENST00000470076 NEPROQ6NW34 567 aa16.67■□□□□ 0.26
COL7A1-208ENST00000470076 CASC4Q6P4E1 433 aa16.67■□□□□ 0.26
COL7A1-208ENST00000470076 SUSD1Q6UWL2 747 aa16.67■□□□□ 0.26
COL7A1-208ENST00000470076 ISLR2Q6UXK2 745 aa16.67■□□□□ 0.26
COL7A1-208ENST00000470076 CENPUQ71F23 418 aa16.67■□□□□ 0.26
COL7A1-208ENST00000470076 MAMDC2Q7Z304 686 aaPredicted RBP16.67■□□□□ 0.26
COL7A1-208ENST00000470076 PRELID2Q8N945 189 aa16.67■□□□□ 0.26
COL7A1-208ENST00000470076 ST6GALNAC3Q8NDV1 305 aa16.67■□□□□ 0.26
COL7A1-208ENST00000470076 CABS1Q96KC9 395 aa16.67■□□□□ 0.26
COL7A1-208ENST00000470076 C10orf90Q96M02 699 aa16.67■□□□□ 0.26
COL7A1-208ENST00000470076 PLCD4Q9BRC7 762 aa16.67■□□□□ 0.26
COL7A1-208ENST00000470076 INTS10Q9NVR2 710 aaKnown RBP16.67■□□□□ 0.26
COL7A1-208ENST00000470076 UTP6Q9NYH9 597 aaKnown RBP16.67■□□□□ 0.26
COL7A1-208ENST00000470076 SAMD15Q9P1V8 674 aa16.67■□□□□ 0.26
COL7A1-208ENST00000470076 GALPQ9UBC7 116 aa16.67■□□□□ 0.26
COL7A1-208ENST00000470076 C3orf18Q9UK00 162 aa16.67■□□□□ 0.26
COL7A1-208ENST00000470076 DIDO1Q9BTC0 2240 aaKnown RBP16.66■□□□□ 0.26
COL7A1-208ENST00000470076 MYO9AB2RTY4 2548 aa16.66■□□□□ 0.26
COL7A1-208ENST00000470076 MAGEB16A2A368 324 aa16.66■□□□□ 0.26
COL7A1-208ENST00000470076 H0YGG7 62 aa16.66■□□□□ 0.26
COL7A1-208ENST00000470076 AVILO75366 819 aa16.66■□□□□ 0.26
COL7A1-208ENST00000470076 USP1O94782 785 aa16.66■□□□□ 0.26
COL7A1-208ENST00000470076 CCNDBP1O95273 360 aa16.66■□□□□ 0.26
COL7A1-208ENST00000470076 ARF3P61204 181 aaPredicted RBP16.66■□□□□ 0.26
COL7A1-208ENST00000470076 Q0VFX4 171 aa16.66■□□□□ 0.26
COL7A1-208ENST00000470076 GPS1Q13098 491 aa16.66■□□□□ 0.26
COL7A1-208ENST00000470076 DSG2Q14126 1118 aa16.66■□□□□ 0.26
COL7A1-208ENST00000470076 ZNF169Q14929 603 aaPredicted RBP16.66■□□□□ 0.26
COL7A1-208ENST00000470076 TLR1Q15399 786 aa16.66■□□□□ 0.26
COL7A1-208ENST00000470076 TRIP13Q15645 432 aaPredicted RBP16.66■□□□□ 0.26
COL7A1-208ENST00000470076 TTLL9Q3SXZ7 439 aa16.66■□□□□ 0.26
COL7A1-208ENST00000470076 ATG9BQ674R7 924 aa16.66■□□□□ 0.26
COL7A1-208ENST00000470076 NEK10Q6ZWH5 1172 aa16.66■□□□□ 0.26
COL7A1-208ENST00000470076 PAQR7Q86WK9 346 aa16.66■□□□□ 0.26
COL7A1-208ENST00000470076 PRSS58Q8IYP2 241 aa16.66■□□□□ 0.26
COL7A1-208ENST00000470076 LMF1Q96S06 567 aa16.66■□□□□ 0.26
COL7A1-208ENST00000470076 KLHL42Q9P2K6 505 aa16.66■□□□□ 0.26
COL7A1-208ENST00000470076 FAM237BA0A1B0GVD1 139 aa16.65■□□□□ 0.26
COL7A1-208ENST00000470076 MLNP12872 115 aa16.65■□□□□ 0.26
COL7A1-208ENST00000470076 CXCR5P32302 372 aa16.65■□□□□ 0.26
COL7A1-208ENST00000470076 VPS41P49754 854 aa16.65■□□□□ 0.26
COL7A1-208ENST00000470076 CLCN7P51798 805 aa16.65■□□□□ 0.26
COL7A1-208ENST00000470076 TERF1P54274 439 aa16.65■□□□□ 0.26
COL7A1-208ENST00000470076 PNLIPRP1P54315 467 aa16.65■□□□□ 0.26
COL7A1-208ENST00000470076 RELAQ04206 551 aa16.65■□□□□ 0.26
COL7A1-208ENST00000470076 PRDX1Q06830 199 aaKnown RBP16.65■□□□□ 0.26
COL7A1-208ENST00000470076 CDC16Q13042 620 aa16.65■□□□□ 0.26
COL7A1-208ENST00000470076 MFAP5Q13361 173 aa16.65■□□□□ 0.26
COL7A1-208ENST00000470076 TSTA3Q13630 321 aaPredicted RBP16.65■□□□□ 0.26
COL7A1-208ENST00000470076 DHX34Q14147 1143 aaKnown RBP16.65■□□□□ 0.26
COL7A1-208ENST00000470076 VWA2Q5GFL6 755 aa16.65■□□□□ 0.26
COL7A1-208ENST00000470076 GARNL3Q5VVW2 1013 aa16.65■□□□□ 0.26
COL7A1-208ENST00000470076 ICE2Q659A1 982 aa16.65■□□□□ 0.26
COL7A1-208ENST00000470076 CAND1Q86VP6 1230 aaKnown RBP16.65■□□□□ 0.26
COL7A1-208ENST00000470076 KCNMB4Q86W47 210 aa16.65■□□□□ 0.26
COL7A1-208ENST00000470076 ZGRF1Q86YA3 2104 aa16.65■□□□□ 0.26
COL7A1-208ENST00000470076 REXO1L1PQ8IX06 675 aa16.65■□□□□ 0.26
COL7A1-208ENST00000470076 KBTBD2Q8IY47 623 aa16.65■□□□□ 0.26
COL7A1-208ENST00000470076 CSNK1A1LQ8N752 337 aa16.65■□□□□ 0.26
COL7A1-208ENST00000470076 FBXO15Q8NCQ5 510 aaPredicted RBP16.65■□□□□ 0.26
COL7A1-208ENST00000470076 CNDP1Q96KN2 507 aa16.65■□□□□ 0.26
COL7A1-208ENST00000470076 PKP4Q99569 1192 aa16.65■□□□□ 0.26
COL7A1-208ENST00000470076 ZNF160Q9HCG1 818 aa16.65■□□□□ 0.26
COL7A1-208ENST00000470076 C14orf105Q9NVL8 296 aa16.65■□□□□ 0.26
COL7A1-208ENST00000470076 STOX2Q9P2F5 926 aaPredicted RBP16.65■□□□□ 0.26
COL7A1-208ENST00000470076 TRPC4Q9UBN4 977 aa16.65■□□□□ 0.26
COL7A1-208ENST00000470076 TAC3Q9UHF0 121 aa16.65■□□□□ 0.26
COL7A1-208ENST00000470076 RUVBL1Q9Y265 456 aaKnown RBP16.65■□□□□ 0.26
COL7A1-208ENST00000470076 CACNA1DQ01668 2161 aa16.65■□□□□ 0.26
COL7A1-208ENST00000470076 NSG1A0A0A6YYJ2 146 aa16.64■□□□□ 0.25
COL7A1-208ENST00000470076 IGKV1-8A0A0C4DH67 115 aa16.64■□□□□ 0.25
COL7A1-208ENST00000470076 CTAGE9A4FU28 777 aa16.64■□□□□ 0.25
COL7A1-208ENST00000470076 TXNDC9O14530 226 aa16.64■□□□□ 0.25
COL7A1-208ENST00000470076 PCDH17O14917 1159 aa16.64■□□□□ 0.25
COL7A1-208ENST00000470076 SLC16A8O95907 504 aa16.64■□□□□ 0.25
COL7A1-208ENST00000470076 KRT14P02533 472 aa16.64■□□□□ 0.25
COL7A1-208ENST00000470076 EZRP15311 586 aaKnown RBP16.64■□□□□ 0.25
COL7A1-208ENST00000470076 FDXRP22570 491 aa16.64■□□□□ 0.25
COL7A1-208ENST00000470076 CXCR2P25025 360 aa16.64■□□□□ 0.25
COL7A1-208ENST00000470076 ABATP80404 500 aa16.64■□□□□ 0.25
COL7A1-208ENST00000470076 THOC5Q13769 683 aaKnown RBP16.64■□□□□ 0.25
COL7A1-208ENST00000470076 ZNF470Q6ECI4 717 aa16.64■□□□□ 0.25
COL7A1-208ENST00000470076 ZNF425Q6IV72 752 aa16.64■□□□□ 0.25
COL7A1-208ENST00000470076 LINC00696Q6ZRV3 163 aa16.64■□□□□ 0.25
COL7A1-208ENST00000470076 NDUFAF7Q7L592 441 aa16.64■□□□□ 0.25
COL7A1-208ENST00000470076 LURAP1LQ8IV03 231 aa16.64■□□□□ 0.25
COL7A1-208ENST00000470076 GRHL3Q8TE85 626 aa16.64■□□□□ 0.25
COL7A1-208ENST00000470076 ZNF480Q8WV37 535 aa16.64■□□□□ 0.25
COL7A1-208ENST00000470076 FAR1Q8WVX9 515 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms