RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 CHST8Q9H2A9 424 aa16.62■□□□□ 0.25
USP39-208ENST00000455732 ACTL8Q9H568 366 aa16.62■□□□□ 0.25
USP39-208ENST00000455732 CCDC177Q9NQR7 707 aaPredicted RBP16.62■□□□□ 0.25
USP39-208ENST00000455732 MTRF1LQ9UGC7 380 aaKnown RBP16.62■□□□□ 0.25
USP39-208ENST00000455732 TUBD1Q9UJT1 453 aa16.62■□□□□ 0.25
USP39-208ENST00000455732 NOVA2Q9UNW9 492 aaKnown RBP16.62■□□□□ 0.25
USP39-208ENST00000455732 TENM4Q6N022 2769 aa16.62■□□□□ 0.25
USP39-208ENST00000455732 MDC1Q14676 2089 aaKnown RBP16.61■□□□□ 0.25
USP39-208ENST00000455732 FITM1A5D6W6 292 aa16.61■□□□□ 0.25
USP39-208ENST00000455732 WISP3O95389 354 aaPredicted RBP16.61■□□□□ 0.25
USP39-208ENST00000455732 HIST1H2AGP0C0S8 130 aaPredicted RBP16.61■□□□□ 0.25
USP39-208ENST00000455732 HIST1H2ADP20671 130 aa16.61■□□□□ 0.25
USP39-208ENST00000455732 PTPN4P29074 926 aa16.61■□□□□ 0.25
USP39-208ENST00000455732 TBPL1P62380 186 aa16.61■□□□□ 0.25
USP39-208ENST00000455732 YBX1P67809 324 aaKnown RBP16.61■□□□□ 0.25
USP39-208ENST00000455732 PPP1R3AQ16821 1122 aa16.61■□□□□ 0.25
USP39-208ENST00000455732 KBTBD12Q3ZCT8 623 aa16.61■□□□□ 0.25
USP39-208ENST00000455732 YOD1Q5VVQ6 348 aaPredicted RBP16.61■□□□□ 0.25
USP39-208ENST00000455732 LCN10Q6JVE6 187 aa16.61■□□□□ 0.25
USP39-208ENST00000455732 SBSNQ6UWP8 590 aa16.61■□□□□ 0.25
USP39-208ENST00000455732 PAQR7Q86WK9 346 aa16.61■□□□□ 0.25
USP39-208ENST00000455732 ZNF655Q8N720 491 aaPredicted RBP16.61■□□□□ 0.25
USP39-208ENST00000455732 FBF1Q8TES7 1133 aa16.61■□□□□ 0.25
USP39-208ENST00000455732 APOBEC4Q8WW27 367 aaKnown RBP16.61■□□□□ 0.25
USP39-208ENST00000455732 TSPAN17Q96FV3 270 aa16.61■□□□□ 0.25
USP39-208ENST00000455732 HIST1H2AHQ96KK5 128 aa16.61■□□□□ 0.25
USP39-208ENST00000455732 GBP5Q96PP8 586 aa16.61■□□□□ 0.25
USP39-208ENST00000455732 HIST1H2AJQ99878 128 aa16.61■□□□□ 0.25
USP39-208ENST00000455732 ZFYVE21Q9BQ24 234 aa16.61■□□□□ 0.25
USP39-208ENST00000455732 C17orf62Q9BQA9 187 aa16.61■□□□□ 0.25
USP39-208ENST00000455732 SELENOSQ9BQE4 189 aa16.61■□□□□ 0.25
USP39-208ENST00000455732 H2AFJQ9BTM1 129 aa16.61■□□□□ 0.25
USP39-208ENST00000455732 NLNQ9BYT8 704 aa16.61■□□□□ 0.25
USP39-208ENST00000455732 SLC25A18Q9H1K4 315 aa16.61■□□□□ 0.25
USP39-208ENST00000455732 UTP6Q9NYH9 597 aaKnown RBP16.61■□□□□ 0.25
USP39-208ENST00000455732 KCNMB2Q9Y691 235 aa16.61■□□□□ 0.25
USP39-208ENST00000455732 CAPN1P07384 714 aa16.6■□□□□ 0.25
USP39-208ENST00000455732 AGXTP21549 392 aa16.6■□□□□ 0.25
USP39-208ENST00000455732 SAT1P21673 171 aa16.6■□□□□ 0.25
USP39-208ENST00000455732 CCND1P24385 295 aa16.6■□□□□ 0.25
USP39-208ENST00000455732 HRH2P25021 359 aa16.6■□□□□ 0.25
USP39-208ENST00000455732 ECHS1P30084 290 aa16.6■□□□□ 0.25
USP39-208ENST00000455732 ARSFP54793 590 aa16.6■□□□□ 0.25
USP39-208ENST00000455732 RPS18P62269 152 aaKnown RBP16.6■□□□□ 0.25
USP39-208ENST00000455732 RPS15P62841 145 aaKnown RBP16.6■□□□□ 0.25
USP39-208ENST00000455732 NFATC3Q12968 1075 aa16.6■□□□□ 0.25
USP39-208ENST00000455732 KCNAB2Q13303 367 aa16.6■□□□□ 0.25
USP39-208ENST00000455732 TSTA3Q13630 321 aaPredicted RBP16.6■□□□□ 0.25
USP39-208ENST00000455732 ZNF460Q14592 562 aa16.6■□□□□ 0.25
USP39-208ENST00000455732 GRM7Q14831 915 aa16.6■□□□□ 0.25
USP39-208ENST00000455732 ZKSCAN8Q15776 578 aaPredicted RBP16.6■□□□□ 0.25
USP39-208ENST00000455732 GRTP1Q5TC63 336 aa16.6■□□□□ 0.25
USP39-208ENST00000455732 PRAMEF13Q5VWM6 474 aa16.6■□□□□ 0.25
USP39-208ENST00000455732 AGTRAPQ6RW13 159 aa16.6■□□□□ 0.25
USP39-208ENST00000455732 MBOAT1Q6ZNC8 495 aa16.6■□□□□ 0.25
USP39-208ENST00000455732 SYVN1Q86TM6 617 aa16.6■□□□□ 0.25
USP39-208ENST00000455732 CEP97Q8IW35 865 aa16.6■□□□□ 0.25
USP39-208ENST00000455732 CTAGE3PQ8IX95 158 aa16.6■□□□□ 0.25
USP39-208ENST00000455732 NDC1Q9BTX1 674 aa16.6■□□□□ 0.25
USP39-208ENST00000455732 SGPP1Q9BX95 441 aa16.6■□□□□ 0.25
USP39-208ENST00000455732 TRIM54Q9BYV2 358 aa16.6■□□□□ 0.25
USP39-208ENST00000455732 GPAMQ9HCL2 828 aa16.6■□□□□ 0.25
USP39-208ENST00000455732 IRAK4Q9NWZ3 460 aa16.6■□□□□ 0.25
USP39-208ENST00000455732 POLHQ9Y253 713 aa16.6■□□□□ 0.25
USP39-208ENST00000455732 FARSAQ9Y285 508 aaKnown RBP16.6■□□□□ 0.25
USP39-208ENST00000455732 MTO1Q9Y2Z2 717 aaKnown RBP16.6■□□□□ 0.25
USP39-208ENST00000455732 PABPN1LA6NDY0 278 aaKnown RBP16.59■□□□□ 0.25
USP39-208ENST00000455732 NRP2O60462 931 aa16.59■□□□□ 0.25
USP39-208ENST00000455732 EZRP15311 586 aaKnown RBP16.59■□□□□ 0.25
USP39-208ENST00000455732 SPRP35270 261 aaPredicted RBP16.59■□□□□ 0.25
USP39-208ENST00000455732 SLC12A2P55011 1212 aa16.59■□□□□ 0.25
USP39-208ENST00000455732 NCF4Q15080 339 aa16.59■□□□□ 0.25
USP39-208ENST00000455732 PTCHD3Q3KNS1 767 aa16.59■□□□□ 0.25
USP39-208ENST00000455732 THEMIS2Q5TEJ8 643 aa16.59■□□□□ 0.25
USP39-208ENST00000455732 FBXO42Q6P3S6 717 aa16.59■□□□□ 0.25
USP39-208ENST00000455732 PPM1NQ8N819 430 aa16.59■□□□□ 0.25
USP39-208ENST00000455732 TTC29Q8NA56 475 aaPredicted RBP16.59■□□□□ 0.25
USP39-208ENST00000455732 ATL1Q8WXF7 558 aa16.59■□□□□ 0.25
USP39-208ENST00000455732 FBXL8Q96CD0 374 aa16.59■□□□□ 0.25
USP39-208ENST00000455732 FMO2Q99518 471 aa16.59■□□□□ 0.25
USP39-208ENST00000455732 DHRS4Q9BTZ2 278 aa16.59■□□□□ 0.25
USP39-208ENST00000455732 FUT8Q9BYC5 575 aa16.59■□□□□ 0.25
USP39-208ENST00000455732 DERL2Q9GZP9 239 aa16.59■□□□□ 0.25
USP39-208ENST00000455732 TXLNGQ9NUQ3 528 aa16.59■□□□□ 0.25
USP39-208ENST00000455732 ARL15Q9NXU5 204 aa16.59■□□□□ 0.25
USP39-208ENST00000455732 IKZF3Q9UKT9 509 aa16.59■□□□□ 0.25
USP39-208ENST00000455732 SNX7Q9UNH6 387 aa16.59■□□□□ 0.25
USP39-208ENST00000455732 A0A0J9YVX5 310 aa16.58■□□□□ 0.24
USP39-208ENST00000455732 A0A1B0GX78 115 aa16.58■□□□□ 0.24
USP39-208ENST00000455732 CDC14CA4D256 554 aa16.58■□□□□ 0.24
USP39-208ENST00000455732 C9J4A7 227 aa16.58■□□□□ 0.24
USP39-208ENST00000455732 ONECUT2O95948 504 aa16.58■□□□□ 0.24
USP39-208ENST00000455732 EMP3P54852 163 aa16.58■□□□□ 0.24
USP39-208ENST00000455732 DCDP81605 110 aaKnown RBP16.58■□□□□ 0.24
USP39-208ENST00000455732 CDKL1Q00532 357 aa16.58■□□□□ 0.24
USP39-208ENST00000455732 IL10RAQ13651 578 aa16.58■□□□□ 0.24
USP39-208ENST00000455732 USP10Q14694 798 aaKnown RBP16.58■□□□□ 0.24
USP39-208ENST00000455732 UGT8Q16880 541 aa16.58■□□□□ 0.24
USP39-208ENST00000455732 FRMPD2BQ6IN97 320 aa16.58■□□□□ 0.24
USP39-208ENST00000455732 LCTLQ6UWM7 567 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms