RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 LCN10Q6JVE6 187 aa17.34■□□□□ 0.37
SQSTM1-204ENST00000453046 ASB18Q6ZVZ8 466 aa17.34■□□□□ 0.37
SQSTM1-204ENST00000453046 CCDC91Q7Z6B0 441 aa17.34■□□□□ 0.37
SQSTM1-204ENST00000453046 MYO18BQ8IUG5 2567 aa17.34■□□□□ 0.37
SQSTM1-204ENST00000453046 APLFQ8IW19 511 aaPredicted RBP17.34■□□□□ 0.37
SQSTM1-204ENST00000453046 SLC22A15Q8IZD6 547 aa17.34■□□□□ 0.37
SQSTM1-204ENST00000453046 GPATCH11Q8N954 259 aa17.34■□□□□ 0.37
SQSTM1-204ENST00000453046 TSPAN17Q96FV3 270 aa17.34■□□□□ 0.37
SQSTM1-204ENST00000453046 PANX3Q96QZ0 392 aa17.34■□□□□ 0.37
SQSTM1-204ENST00000453046 NLNQ9BYT8 704 aa17.34■□□□□ 0.37
SQSTM1-204ENST00000453046 CCDC68Q9H2F9 335 aa17.34■□□□□ 0.37
SQSTM1-204ENST00000453046 SNX15Q9NRS6 342 aa17.34■□□□□ 0.37
SQSTM1-204ENST00000453046 IRAK4Q9NWZ3 460 aa17.34■□□□□ 0.37
SQSTM1-204ENST00000453046 ARGFXA6NJG6 315 aa17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 C9J4A7 227 aa17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 DNAJB5O75953 348 aa17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 OR2B3O76000 313 aa17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 ESR1P03372 595 aa17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 TPBGLP0DKB5 382 aa17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 KRT4P19013 534 aa17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 SLC18A2Q05940 514 aa17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 KIR2DS3Q14952 304 aa17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 DEFB110Q30KQ9 67 aa17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 PTCHD3Q3KNS1 767 aa17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 TTC23LQ6PF05 361 aa17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 VRK3Q8IV63 474 aa17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 ARFGAP2Q8N6H7 521 aa17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 FAM76AQ8TAV0 307 aa17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 LKAAEAR1Q8TD35 194 aa17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 SKA2Q8WVK7 121 aaPredicted RBP17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 APOPT1Q96IL0 206 aa17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 DPH2Q9BQC3 489 aaPredicted RBP17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 AARSD1Q9BTE6 412 aaKnown RBP17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 FAM60AQ9NP50 221 aa17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 ACSS2Q9NR19 701 aa17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 CAMSAP3Q9P1Y5 1249 aaPredicted RBP17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 GNPTGQ9UJJ9 305 aa17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 TCFL5Q9UL49 500 aa17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 MTO1Q9Y2Z2 717 aaKnown RBP17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 AP1M2Q9Y6Q5 423 aa17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 SETXQ7Z333 2677 aaKnown RBP17.33■□□□□ 0.36
SQSTM1-204ENST00000453046 ASH1LQ9NR48 2969 aaKnown RBP17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 A0A1W2PPM1 405 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 H3BMM5 538 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 PRPF4O43172 522 aaKnown RBP eCLIP17.32■□□□□ 0.361e-8■■■■□ 19.6
SQSTM1-204ENST00000453046 GPC4O75487 556 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 ATXN8OSP0DMR3 200 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 CD9P21926 228 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 AOAHP28039 575 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 TYK2P29597 1187 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 HPDP32754 393 aaPredicted RBP17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 RAB28P51157 221 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 SLC18A1P54219 525 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 SLC12A2P55011 1212 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 RAB10P61026 200 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 PPP2R2AP63151 447 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 USP10Q14694 798 aaKnown RBP17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 ZIC1Q15915 447 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 SLC5A12Q1EHB4 618 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 RBM20Q5T481 1227 aaKnown RBP17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 HECTD2Q5U5R9 776 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 UNC5DQ6UXZ4 953 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 SH2D5Q6ZV89 423 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 DCUN1D3Q8IWE4 304 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 C4orf33Q8N1A6 199 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 SLC22A18Q96BI1 424 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 TRIM55Q9BYV6 548 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 ING2Q9H160 280 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 P2RY12Q9H244 342 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 CNOT10Q9H9A5 744 aaKnown RBP17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 POPDC3Q9HBV1 291 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 CIDEBQ9UHD4 219 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 SLC39A10Q9ULF5 831 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 CRYL1Q9Y2S2 319 aa17.32■□□□□ 0.36
SQSTM1-204ENST00000453046 K7EM74 188 aa17.31■□□□□ 0.36
SQSTM1-204ENST00000453046 KPNA5O15131 536 aa17.31■□□□□ 0.36
SQSTM1-204ENST00000453046 PYGBP11216 843 aa17.31■□□□□ 0.36
SQSTM1-204ENST00000453046 PKMP14618 531 aaKnown RBP17.31■□□□□ 0.36
SQSTM1-204ENST00000453046 STMN1P16949 149 aa17.31■□□□□ 0.36
SQSTM1-204ENST00000453046 FDXRP22570 491 aa17.31■□□□□ 0.36
SQSTM1-204ENST00000453046 CRABP2P29373 138 aa17.31■□□□□ 0.36
SQSTM1-204ENST00000453046 PKLRP30613 574 aa17.31■□□□□ 0.36
SQSTM1-204ENST00000453046 CCL11P51671 97 aa17.31■□□□□ 0.36
SQSTM1-204ENST00000453046 CHAF1BQ13112 559 aa17.31■□□□□ 0.36
SQSTM1-204ENST00000453046 COLEC12Q5KU26 742 aa17.31■□□□□ 0.36
SQSTM1-204ENST00000453046 CPZQ66K79 652 aa17.31■□□□□ 0.36
SQSTM1-204ENST00000453046 OTOAQ7RTW8 1153 aa17.31■□□□□ 0.36
SQSTM1-204ENST00000453046 CMC1Q7Z7K0 106 aa17.31■□□□□ 0.36
SQSTM1-204ENST00000453046 LCA5Q86VQ0 697 aa17.31■□□□□ 0.36
SQSTM1-204ENST00000453046 C2orf73Q8N5S3 287 aaPredicted RBP17.31■□□□□ 0.36
SQSTM1-204ENST00000453046 KCNJ9Q92806 393 aa17.31■□□□□ 0.36
SQSTM1-204ENST00000453046 NDNQ99608 321 aa17.31■□□□□ 0.36
SQSTM1-204ENST00000453046 C17orf62Q9BQA9 187 aa17.31■□□□□ 0.36
SQSTM1-204ENST00000453046 SELENOSQ9BQE4 189 aa17.31■□□□□ 0.36
SQSTM1-204ENST00000453046 SPRTNQ9H040 489 aaPredicted RBP17.31■□□□□ 0.36
SQSTM1-204ENST00000453046 TXLNGQ9NUQ3 528 aa17.31■□□□□ 0.36
SQSTM1-204ENST00000453046 GPN3Q9UHW5 284 aaPredicted RBP17.31■□□□□ 0.36
SQSTM1-204ENST00000453046 CDYLQ9Y232 598 aa17.31■□□□□ 0.36
SQSTM1-204ENST00000453046 PADI2Q9Y2J8 665 aa17.31■□□□□ 0.36
SQSTM1-204ENST00000453046 TMEM120BA0PK00 339 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms