RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 COLEC10Q9Y6Z7 277 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 C9JVG2 144 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 STK25O00506 426 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 RASGRP1O95267 797 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 BCKDHAP12694 445 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 AK4P27144 223 aaPredicted RBP13.76□□□□□ -0.21
USP39-207ENST00000450066 SLBPQ14493 270 aaKnown RBP eCLIP13.76□□□□□ -0.21
USP39-207ENST00000450066 KPNB1Q14974 876 aaKnown RBP13.76□□□□□ -0.21
USP39-207ENST00000450066 TRMT5Q32P41 509 aaKnown RBP13.76□□□□□ -0.21
USP39-207ENST00000450066 C6orf163Q5TEZ5 329 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 RETREG3Q86VR2 466 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 HID1Q8IV36 788 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 FAM9CQ8IZT9 166 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 CAMKK1Q8N5S9 505 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 LINC01555Q8NAE3 123 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 HUS1BQ8NHY5 278 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 WDR60Q8WVS4 1066 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 SH3KBP1Q96B97 665 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 CDRT15Q96T59 188 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 SERPINI1Q99574 410 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 PCED1AQ9H1Q7 454 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 MAP10Q9P2G4 905 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 PCDHGA7Q9Y5G6 932 aa13.76□□□□□ -0.21
USP39-207ENST00000450066 SPTY2D1-AS1A0A0U1RR47 76 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 A0A1W2PPV9 198 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 PIPSLA2A3N6 862 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 KDM1AO60341 852 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 ENTPD5O75356 428 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 PRPS2P11908 318 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 MAPK1P28482 360 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 IL12AP29459 219 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 PTGR1Q14914 329 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 USP39Q53GS9 565 aaKnown RBP13.75□□□□□ -0.21
USP39-207ENST00000450066 C8orf82Q6P1X6 216 aaPredicted RBP13.75□□□□□ -0.21
USP39-207ENST00000450066 C17orf64Q86WR6 236 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 LIX1Q8N485 282 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 OR2L8Q8NGY9 312 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 UBE2E3Q969T4 207 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 APIPQ96GX9 242 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 SLC45A3Q96JT2 553 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 NRTNQ99748 197 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 TAC3Q9UHF0 121 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 TSC22D4Q9Y3Q8 395 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 CCDC154A6NI56 674 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 FOXE1O00358 373 aaPredicted RBP13.75□□□□□ -0.21
USP39-207ENST00000450066 CFLARO15519 480 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 NDUFS2O75306 463 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 EEDO75530 441 aaKnown RBP13.75□□□□□ -0.21
USP39-207ENST00000450066 PDE5AO76074 875 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 TNFP01375 233 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 THEGLP0DJG4 465 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 PCNAP12004 261 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 CDH1P12830 882 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 AMD1P17707 334 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 NDUFS1P28331 727 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 PKLRP30613 574 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 ACTR1BP42025 376 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 PXNP49023 591 aaPredicted RBP13.75□□□□□ -0.21
USP39-207ENST00000450066 ACTR1AP61163 376 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 PSME3P61289 254 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 MTAPQ13126 283 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 DDX39BQ13838 428 aaKnown RBP13.75□□□□□ -0.21
USP39-207ENST00000450066 SNCBQ16143 134 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 C1orf146Q5VVC0 180 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 SLC30A9Q6PML9 568 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 FAM129CQ86XR2 697 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 RNF175Q8N4F7 328 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 GLB1L3Q8NCI6 653 aaPredicted RBP13.75□□□□□ -0.21
USP39-207ENST00000450066 CADM4Q8NFZ8 388 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 OR52E1Q8NGJ3 308 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 CCL4L1Q8NHW4 92 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 SNX19Q92543 992 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 VPS33AQ96AX1 596 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 FCRL1Q96LA6 429 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 ACAT2Q9BWD1 397 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 KIR3DX1Q9H7L2 352 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 PELI2Q9HAT8 420 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 CROTQ9UKG9 612 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 DLGAP4Q9Y2H0 992 aa13.75□□□□□ -0.21
USP39-207ENST00000450066 A6NCN8 305 aa13.74□□□□□ -0.21
USP39-207ENST00000450066 MAGEB17A8MXT2 336 aa13.74□□□□□ -0.21
USP39-207ENST00000450066 EML2O95834 649 aa13.74□□□□□ -0.21
USP39-207ENST00000450066 DPP6P42658 865 aa13.74□□□□□ -0.21
USP39-207ENST00000450066 ACTR3P61158 418 aa13.74□□□□□ -0.21
USP39-207ENST00000450066 ILF3Q12906 894 aaKnown RBP eCLIP13.74□□□□□ -0.215e-9■■■■■ 33.1
USP39-207ENST00000450066 PIGGQ5H8A4 983 aa13.74□□□□□ -0.21
USP39-207ENST00000450066 NRROSQ86YC3 692 aa13.74□□□□□ -0.21
USP39-207ENST00000450066 HPS6Q86YV9 775 aa13.74□□□□□ -0.21
USP39-207ENST00000450066 KRT78Q8N1N4 520 aa13.74□□□□□ -0.21
USP39-207ENST00000450066 ABHD11Q8NFV4 315 aa13.74□□□□□ -0.21
USP39-207ENST00000450066 ZBTB18Q99592 522 aa13.74□□□□□ -0.21
USP39-207ENST00000450066 HOPXQ9BPY8 73 aaPredicted RBP13.74□□□□□ -0.21
USP39-207ENST00000450066 SPAG4Q9NPE6 437 aa13.74□□□□□ -0.21
USP39-207ENST00000450066 GID8Q9NWU2 228 aa13.74□□□□□ -0.21
USP39-207ENST00000450066 THEGQ9P2T0 379 aa13.74□□□□□ -0.21
USP39-207ENST00000450066 LEF1Q9UJU2 399 aaPredicted RBP13.74□□□□□ -0.21
USP39-207ENST00000450066 SIT1Q9Y3P8 196 aa13.74□□□□□ -0.21
USP39-207ENST00000450066 ASPDHA6ND91 283 aa13.73□□□□□ -0.21
USP39-207ENST00000450066 METTL12A8MUP2 240 aa13.73□□□□□ -0.21
USP39-207ENST00000450066 F3P13726 295 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms