RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 AKT1S1Q96B36 256 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 TMEM246Q9BRR3 403 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 KCNIP2Q9NS61 270 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 SIRPGQ9P1W8 387 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 KLHL42Q9P2K6 505 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 NRCAMQ92823 1304 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 PHRF1Q9P1Y6 1649 aaKnown RBP7.02□□□□□ -1.29
VPS53-204ENST00000437048 IFT172Q9UG01 1749 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 RNASEH2AO75792 299 aaKnown RBP7.02□□□□□ -1.29
VPS53-204ENST00000437048 DLX5P56178 289 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 GAREM2Q75VX8 874 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 BRD9Q9H8M2 597 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 C12orf10Q9HB07 376 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 NUBP2Q9Y5Y2 271 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 CBX4O00257 560 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 RHOQP17081 205 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 MPIP34949 423 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 RANP62826 216 aaKnown RBP7.02□□□□□ -1.29
VPS53-204ENST00000437048 RPS27AP62979 156 aaKnown RBP7.02□□□□□ -1.29
VPS53-204ENST00000437048 UBA52P62987 128 aaKnown RBP7.02□□□□□ -1.29
VPS53-204ENST00000437048 DBPQ10586 325 aaPredicted RBP7.02□□□□□ -1.29
VPS53-204ENST00000437048 EARS2Q5JPH6 523 aaKnown RBP7.02□□□□□ -1.29
VPS53-204ENST00000437048 SLC22A16Q86VW1 577 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 C1orf52Q8N6N3 182 aaKnown RBP7.02□□□□□ -1.29
VPS53-204ENST00000437048 C3orf49Q96BT1 292 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 SNX27Q96L92 541 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 SYT3Q9BQG1 590 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 KLHL21Q9UJP4 597 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 A0A0D9SG52 128 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 H1F0P07305 194 aaKnown RBP7.02□□□□□ -1.29
VPS53-204ENST00000437048 TSPAN8P19075 237 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 KEAP1Q14145 624 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 C11orf91Q3C1V1 193 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 MED27Q6P2C8 311 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 RFPL4BQ6ZWI9 263 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 BPIFB1Q8TDL5 484 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 PIGBQ92521 554 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 MALSU1Q96EH3 234 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 MKKSQ9NPJ1 570 aaPredicted RBP7.02□□□□□ -1.29
VPS53-204ENST00000437048 CHURC1-FNTBB4DL54 471 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 UBFD1O14562 309 aaKnown RBP7.02□□□□□ -1.29
VPS53-204ENST00000437048 IRAK2O43187 625 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 HTR3BO95264 441 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 CXCR3P49682 368 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 SRPXP78539 464 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 CLCQ05315 142 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 LDLRAP1Q5SW96 308 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 ZNF529Q6P280 563 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 GPAT4Q86UL3 456 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 MFSD8Q8NHS3 518 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 TMEM121BQ9BXQ6 578 aaPredicted RBP7.02□□□□□ -1.29
VPS53-204ENST00000437048 TTYH3Q9C0H2 523 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 CCM2LQ9NUG4 571 aaPredicted RBP7.02□□□□□ -1.29
VPS53-204ENST00000437048 PCDHB3Q9Y5E6 796 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 ZSCAN5BA6NJL1 495 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 EPORP19235 508 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 SSR2P43308 183 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 CRISP1P54107 249 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 LINGO2Q7L985 606 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 VWA5B2Q8N398 1253 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 OR5T3Q8NGG3 340 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 TAAR8Q969N4 342 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 LURAP1Q96LR2 239 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 PCDHB18PQ96TA0 734 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 LPIN3Q9BQK8 851 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 ZNF69Q9UC07 566 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 PRRC2BQ5JSZ5 2229 aaKnown RBP7.02□□□□□ -1.29
VPS53-204ENST00000437048 CDHR4A6H8M9 788 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 A8MXE2 369 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 KCNA5P22460 613 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 MAP3K8P41279 467 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 BACE1P56817 501 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 ALYREFQ86V81 257 aaKnown RBP7.02□□□□□ -1.29
VPS53-204ENST00000437048 ZNF440Q8IYI8 595 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 OR2L3Q8NG85 312 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 UPF1Q92900 1129 aaKnown RBP eCLIP7.02□□□□□ -1.296e-9■■■■■ 43.4
VPS53-204ENST00000437048 VMP1Q96GC9 406 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 CD180Q99467 661 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 AARSD1Q9BTE6 412 aaKnown RBP7.02□□□□□ -1.29
VPS53-204ENST00000437048 ACTRT3Q9BYD9 372 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 PADI2Q9Y2J8 665 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 AXIN2Q9Y2T1 843 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 AKAP6Q13023 2319 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 ZNF670-ZNF695F2Z2N8 137 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 NFKB2Q00653 900 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 PEA15Q15121 130 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 DOK7Q18PE1 504 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 ACTBL2Q562R1 376 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 AGAP6Q5VW22 663 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 AGAP4Q96P64 663 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 GFM1Q96RP9 751 aaKnown RBP7.02□□□□□ -1.29
VPS53-204ENST00000437048 SPG21Q9NZD8 308 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 FMN2Q9NZ56 1722 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 SVILO95425 2214 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 PREX1Q8TCU6 1659 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 CACNB4O00305 520 aaPredicted RBP7.02□□□□□ -1.29
VPS53-204ENST00000437048 TPPPO94811 219 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 IFNA5P01569 189 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 PIGRP01833 764 aa7.02□□□□□ -1.29
VPS53-204ENST00000437048 HOXD12P35452 270 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms