RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SHROOM3Q8TF72 1996 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 CHD2O14647 1828 aaKnown RBP6.7□□□□□ -1.34
SCN1A-204ENST00000423058 FER1L6Q2WGJ9 1857 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 TCRBV9S1A1TA0A576 114 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 SH3D21A4FU49 640 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 A8MUA0 341 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 CLDN25C9JDP6 229 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 BHMG1C9JSJ3 638 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-204ENST00000423058 RNF13O43567 381 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 ABCB7O75027 752 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 SOX30O94993 753 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 GOT2P00505 430 aaKnown RBP6.7□□□□□ -1.34
SCN1A-204ENST00000423058 ALDOAP04075 364 aaKnown RBP6.7□□□□□ -1.34
SCN1A-204ENST00000423058 ZNF30P17039 623 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 PRKCHP24723 683 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 RGS19P49795 217 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 CLCN2P51788 898 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 RPS21P63220 83 aaKnown RBP6.7□□□□□ -1.34
SCN1A-204ENST00000423058 S100A12P80511 92 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 MERTKQ12866 999 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 ESCO2Q56NI9 601 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 LRRC66Q68CR7 880 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 ZNF550Q7Z398 422 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 MMAAQ8IVH4 418 aaKnown RBP6.7□□□□□ -1.34
SCN1A-204ENST00000423058 TRIB2Q92519 343 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 CASD1Q96PB1 797 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 SLC2A11Q9BYW1 496 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 ACSS3Q9H6R3 686 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 ACSL5Q9ULC5 683 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 TMED5Q9Y3A6 229 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 DEPDC5O75140 1603 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 DPPA5A6NC42 116 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 IQCF5A8MTL0 148 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 DUX1O43812 170 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 RAC2P15153 192 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 MSX1P28360 303 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 DPP6P42658 865 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 MAZP56270 477 aaKnown RBP6.7□□□□□ -1.34
SCN1A-204ENST00000423058 POU5F1Q01860 360 aaKnown RBP6.7□□□□□ -1.34
SCN1A-204ENST00000423058 NPTX1Q15818 432 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 TREML2Q5T2D2 321 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 RFWD3Q6PCD5 774 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 ERN2Q76MJ5 926 aaKnown RBP6.7□□□□□ -1.34
SCN1A-204ENST00000423058 ANKK1Q8NFD2 765 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 OR56A1Q8NGH5 318 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 MOAP1Q96BY2 351 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 RBP7Q96R05 134 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 WDR77Q9BQA1 342 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-204ENST00000423058 BRD7Q9NPI1 651 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 ZDHHC3Q9NYG2 299 aa6.7□□□□□ -1.34
SCN1A-204ENST00000423058 MDFIC2A0A1B0GVS7 189 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 FBP2O00757 339 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 AHSA1O95433 338 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 OXSR1O95747 527 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-204ENST00000423058 RPLP0P05388 317 aaKnown RBP6.69□□□□□ -1.34
SCN1A-204ENST00000423058 HBQ1P09105 142 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 NCK1P16333 377 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 GSTT1P30711 240 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 GRIA2P42262 883 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 ZACNQ401N2 412 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 IQCCQ4KMZ1 466 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 CRTC2Q53ET0 693 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-204ENST00000423058 CRB2Q5IJ48 1285 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 CYP2U1Q7Z449 544 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 LRRC20Q8TCA0 184 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 POF1BQ8WVV4 589 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 HIPK2Q9H2X6 1198 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 SUV39H2Q9H5I1 410 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 TRIM36Q9NQ86 728 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 ZDHHC9Q9Y397 364 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 ROBO3Q96MS0 1386 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 DISC1C4P0D8 188 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 FAM227AF5H4B4 570 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 ENPP3O14638 875 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 S100PP25815 95 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 CDH12P55289 794 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 OR12D2P58182 307 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 GNG2P59768 71 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 RPL6Q02878 288 aaKnown RBP6.69□□□□□ -1.34
SCN1A-204ENST00000423058 KCTD21Q4G0X4 260 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 JAGN1Q8N5M9 183 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 PHOSPHO1Q8TCT1 267 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 SH3RF2Q8TEC5 729 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 TAS2R9Q9NYW1 312 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 PLLPQ9Y342 182 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 A0A1W2PRQ8 180 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 TCRBV5S4A2TA0A5A2 114 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 OTOL1A6NHN0 477 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-204ENST00000423058 BTBD19C9JJ37 291 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 K7EPI3 171 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 UNC5CO95185 931 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 PRDX6P30041 224 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 SLC6A4P31645 630 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 CDKN1CP49918 316 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-204ENST00000423058 UBE2NP61088 152 aaKnown RBP6.69□□□□□ -1.34
SCN1A-204ENST00000423058 NRG1Q02297 640 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-204ENST00000423058 ADAM15Q13444 863 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 ANKRD26P1Q6NSI1 321 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 MFSD2AQ8NA29 543 aa6.69□□□□□ -1.34
SCN1A-204ENST00000423058 SLC22A8Q8TCC7 542 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms