RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 EFCAB11Q9BUY7 163 aa13.73□□□□□ -0.21
SF3B1-204ENST00000414963 ACAT2Q9BWD1 397 aa13.73□□□□□ -0.21
SF3B1-204ENST00000414963 SHCBP1LQ9BZQ2 653 aa13.73□□□□□ -0.21
SF3B1-204ENST00000414963 NSRP1Q9H0G5 558 aaKnown RBP13.73□□□□□ -0.21
SF3B1-204ENST00000414963 NT5DC2Q9H857 520 aa13.73□□□□□ -0.21
SF3B1-204ENST00000414963 PARD6AQ9NPB6 346 aa13.73□□□□□ -0.21
SF3B1-204ENST00000414963 TMEM184CQ9NVA4 438 aa13.73□□□□□ -0.21
SF3B1-204ENST00000414963 FAM86C1Q9NVL1 165 aa13.73□□□□□ -0.21
SF3B1-204ENST00000414963 EVA1BQ9NVM1 165 aa13.73□□□□□ -0.21
SF3B1-204ENST00000414963 KCNK4Q9NYG8 393 aa13.73□□□□□ -0.21
SF3B1-204ENST00000414963 POMT2Q9UKY4 750 aa13.73□□□□□ -0.21
SF3B1-204ENST00000414963 RNF11Q9Y3C5 154 aa13.73□□□□□ -0.21
SF3B1-204ENST00000414963 TSC22D4Q9Y3Q8 395 aa13.73□□□□□ -0.21
SF3B1-204ENST00000414963 LAMA1P25391 3075 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 IGHV1OR21-1A0A087WYE8 117 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 IGKV1-8A0A0C4DH67 115 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 H0YIV9 168 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 ZNF195O14628 629 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 HGSO14964 777 aaPredicted RBP13.72□□□□□ -0.21
SF3B1-204ENST00000414963 HDAC3O15379 428 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 CAPN1P07384 714 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 CDH1P12830 882 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 CD59P13987 128 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 UGT2B7P16662 529 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 TYRP1P17643 537 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 AMD1P17707 334 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 CD22P20273 847 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 PSMB5P28074 263 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 CAPZBP47756 277 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 CBX1P83916 185 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 NAA25Q14CX7 972 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 PAGE2BQ5JRK9 111 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 CATSPEREQ5SY80 951 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 C10orf62Q5T681 223 aaPredicted RBP13.72□□□□□ -0.21
SF3B1-204ENST00000414963 ZNF425Q6IV72 752 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 ARMC6Q6NXE6 501 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 SPESP1Q6UW49 350 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 EFL1Q7Z2Z2 1120 aaKnown RBP13.72□□□□□ -0.21
SF3B1-204ENST00000414963 PIGWQ7Z7B1 504 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 CPLX4Q7Z7G2 160 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 WDR75Q8IWA0 830 aaKnown RBP13.72□□□□□ -0.21
SF3B1-204ENST00000414963 CDYL2Q8N8U2 506 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 OR10G6Q8NH81 332 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 METTL6Q8TCB7 284 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 RSC1A1Q92681 617 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 CCT7Q99832 543 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 EDEM2Q9BV94 578 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 SARGQ9BW04 601 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 TRIM55Q9BYV6 548 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 MRPS30Q9NP92 439 aaKnown RBP13.72□□□□□ -0.21
SF3B1-204ENST00000414963 TMEM9BQ9NQ34 198 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 ABCF3Q9NUQ8 709 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 ANKMY1Q9P2S6 941 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 SNX7Q9UNH6 387 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 BTBD3Q9Y2F9 522 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 DNAJC15Q9Y5T4 150 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 ADAMTS9Q9P2N4 1935 aa13.72□□□□□ -0.21
SF3B1-204ENST00000414963 WDR87Q6ZQQ6 2873 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 SERTM1A2A2V5 107 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 TMEM233B4DJY2 109 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 CRCPO75575 148 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 TROVE2P10155 538 aaKnown RBP eCLIP13.71□□□□□ -0.21
SF3B1-204ENST00000414963 MYF5P13349 255 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 CXCR2P25025 360 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 CD1CP29017 333 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 GRIA3P42263 894 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 FOXA1P55317 472 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 OR1D5P58170 312 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 YBX1P67809 324 aaKnown RBP13.71□□□□□ -0.21
SF3B1-204ENST00000414963 CSNK1G2P78368 415 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 KIAA1614Q5VZ46 1190 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 CLEC6AQ6EIG7 209 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 GUSBP11Q6P575 273 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 WDR74Q6RFH5 385 aaPredicted RBP13.71□□□□□ -0.21
SF3B1-204ENST00000414963 PRR23CQ6ZRP0 262 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 SPRED1Q7Z699 444 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 TMPRSS11BQ86T26 416 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 LAS2Q8IYD9 372 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 CARFQ8N187 725 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 DCBLD1Q8N8Z6 715 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 UBE2E3Q969T4 207 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 ZUFSPQ96AP4 578 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 CCDC74AQ96AQ1 378 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 KCNA7Q96RP8 456 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 CD180Q99467 661 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 AIF1LQ9BQI0 150 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 KCNK13Q9HB14 408 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 SLC6A20Q9NP91 592 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 RXFP3Q9NSD7 469 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 CUEDC1Q9NWM3 386 aaPredicted RBP13.71□□□□□ -0.21
SF3B1-204ENST00000414963 GEMIN8Q9NWZ8 242 aaKnown RBP13.71□□□□□ -0.21
SF3B1-204ENST00000414963 KLHL14Q9P2G3 628 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 ZNF490Q9ULM2 529 aaPredicted RBP13.71□□□□□ -0.21
SF3B1-204ENST00000414963 SNX6Q9UNH7 406 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 PCDHGA11Q9Y5H2 935 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 USH1CQ9Y6N9 552 aa13.71□□□□□ -0.21
SF3B1-204ENST00000414963 FRYLO94915 3013 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 GSAPA4D1B5 854 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 H7BY64 318 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 MANBAO00462 879 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms