RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 RCAN2Q14206 197 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 HKDC1Q2TB90 917 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 TOR2AQ5JU69 321 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 BRMS1LQ5PSV4 323 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 C10orf120Q5SQS8 335 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 DACT2Q5SW24 774 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 SYT6Q5T7P8 510 aaPredicted RBP9.07□□□□□ -0.96
COL28A1-201ENST00000399429 LINC00299Q6ZSB3 139 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 ZSWIM9Q86XI8 627 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 CILP2Q8IUL8 1156 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 LAX1Q8IWV1 398 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 COPS8Q99627 209 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 SLC6A15Q9H2J7 730 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 RANBP3Q9H6Z4 567 aaPredicted RBP9.07□□□□□ -0.96
COL28A1-201ENST00000399429 ABI2Q9NYB9 513 aaPredicted RBP9.07□□□□□ -0.96
COL28A1-201ENST00000399429 MYH14Q7Z406 1995 aaKnown RBP9.07□□□□□ -0.96
COL28A1-201ENST00000399429 LOC102723532A0A0G2JNH3 316 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 CLCA1A8K7I4 914 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 TEX46H3BTG2 121 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 MATN3O15232 486 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 KERAO60938 352 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 SOX14O95416 240 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 HLA-DQB2P05538 268 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 ENGP17813 658 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 CBLP22681 906 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 GABRB3P28472 473 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 PRDX3P30048 256 aaKnown RBP9.07□□□□□ -0.96
COL28A1-201ENST00000399429 OR1E2P47887 323 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 PAFAH1B3Q15102 231 aaKnown RBP9.07□□□□□ -0.96
COL28A1-201ENST00000399429 SWI5Q1ZZU3 235 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 CDC73Q6P1J9 531 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 TP53I13Q8NBR0 393 aaPredicted RBP9.07□□□□□ -0.96
COL28A1-201ENST00000399429 ING5Q8WYH8 240 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 FCRL5Q96RD9 977 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 PDCD10Q9BUL8 212 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 RBCK1Q9BYM8 510 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 CITO14578 2027 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 ECM29Q5VYK3 1845 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 SLC35F4A4IF30 521 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 MAGEB17A8MXT2 336 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 CBX4O00257 560 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 RGS13O14921 159 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 ZNF780AO75290 641 aaPredicted RBP9.07□□□□□ -0.96
COL28A1-201ENST00000399429 NIPSNAP2O75323 286 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 PAGE1O75459 146 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 SOX3P41225 446 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 GPR15P49685 360 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 COQ5Q5HYK3 327 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 OR4F3Q6IEY1 312 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 AFTPHQ6ULP2 937 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 SLC16A12Q6ZSM3 486 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 ZFAND4Q86XD8 727 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 CYP4Z2PQ8N1L4 340 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 GDPD1Q8N9F7 314 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 IL17RDQ8NFM7 739 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 OR8J3Q8NGG0 315 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 CEP76Q8TAP6 659 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 KLHL6Q8WZ60 621 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 COPS5Q92905 334 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 SCRN2Q96FV2 425 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 FEVQ99581 238 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.07□□□□□ -0.96
COL28A1-201ENST00000399429 SLC39A8Q9C0K1 460 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 ABCG5Q9H222 651 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 SMOC2Q9H3U7 446 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 PLAC1Q9HBJ0 212 aa9.07□□□□□ -0.96
COL28A1-201ENST00000399429 CUEDC1Q9NWM3 386 aaPredicted RBP9.07□□□□□ -0.96
COL28A1-201ENST00000399429 RPP40O75818 363 aaKnown RBP9.06□□□□□ -0.96
COL28A1-201ENST00000399429 GDF5P43026 501 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 FNTBP49356 437 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 NKX3-2P78367 333 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 OR4F6Q8NGB9 312 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 OR52B6Q8NGF0 335 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 SGTBQ96EQ0 304 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 PSKH2Q96QS6 385 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 TM9SF2Q99805 663 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 TNFRSF12AQ9NP84 129 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 SCUBE2Q9NQ36 999 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 TRPC4Q9UBN4 977 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 SEC14L4Q9UDX3 406 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 UBE2QL1A1L167 161 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 PPEF2O14830 753 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 LYRM1O43325 122 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 TPST2O60704 377 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 GADD45GO95257 159 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 ZNF7P17097 686 aaPredicted RBP9.06□□□□□ -0.96
COL28A1-201ENST00000399429 M6PRP20645 277 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 HRH2P25021 359 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 LCN1P31025 176 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 SLC6A4P31645 630 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 TTPAP49638 278 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 IRF8Q02556 426 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 CDKL4Q5MAI5 379 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 SNX20Q7Z614 316 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 ANGPTL6Q8NI99 470 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 MED8Q96G25 268 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 SLIRPQ9GZT3 109 aaKnown RBP9.06□□□□□ -0.96
COL28A1-201ENST00000399429 MIOSQ9NXC5 875 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 TAS2R7Q9NYW3 318 aa9.06□□□□□ -0.96
COL28A1-201ENST00000399429 COPZ2Q9P299 210 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms