RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 PRR35P0CG20 571 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 ITGB6P18564 788 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 KRT4P19013 534 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 ITGAXP20702 1163 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 CSHL1Q14406 222 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 UGT3A2Q3SY77 523 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 PRAMEF14Q5SWL7 426 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 PRAMEF13Q5VWM6 474 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 CES4AQ5XG92 561 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 TRIM46Q7Z4K8 759 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 KDF1Q8NAX2 398 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-202ENST00000394943 AGAP11Q8TF27 550 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 SLC5A11Q8WWX8 675 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 CCT7Q99832 543 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 NUDT22Q9BRQ3 303 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 AICDAQ9GZX7 198 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 DRC3Q9H069 523 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 ZBTB26Q9HCK0 441 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 IMP3Q9NV31 184 aaKnown RBP6.73□□□□□ -1.33
LIMA1-202ENST00000394943 DNAJC11Q9NVH1 559 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 LNPEPQ9UIQ6 1025 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 PSMD13Q9UNM6 376 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 DOLKQ9UPQ8 538 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 SH2B3Q9UQQ2 575 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 DNAJC16Q9Y2G8 782 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 ASB1Q9Y576 335 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 PCDHGA4Q9Y5G9 962 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 SLC22A7Q9Y694 548 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 CDK2AP1O14519 115 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 CAPN5O15484 640 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-202ENST00000394943 MYZAPP0CAP1 466 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 C1GALT1C1LP0DN25 315 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 JUPP14923 745 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 CMPK1P30085 196 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 HNF4AP41235 474 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 TMEM214Q6NUQ4 689 aaKnown RBP6.73□□□□□ -1.33
LIMA1-202ENST00000394943 ATG14Q6ZNE5 492 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 OTUD6BQ8N6M0 293 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 PROKR1Q8TCW9 393 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 EFCAB11Q9BUY7 163 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 SHCBP1LQ9BZQ2 653 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 UTP6Q9NYH9 597 aaKnown RBP6.73□□□□□ -1.33
LIMA1-202ENST00000394943 TMEM9Q9P0T7 183 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 ADAM29Q9UKF5 820 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 ZNF490Q9ULM2 529 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-202ENST00000394943 RNF112Q9ULX5 631 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 TXNDC9O14530 226 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 TBX19O60806 448 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 CLEC3AO75596 197 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 STK16O75716 305 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 CAPN1P07384 714 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 MAP4P27816 1152 aaKnown RBP6.73□□□□□ -1.33
LIMA1-202ENST00000394943 ACY1Q03154 408 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 FAM53BQ14153 422 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 PTCHD3Q3KNS1 767 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 ZC3H12BQ5HYM0 836 aaKnown RBP6.73□□□□□ -1.33
LIMA1-202ENST00000394943 KANK2Q63ZY3 851 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 TLDC1Q6P9B6 456 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 NAPRTQ6XQN6 538 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 CAPN12Q6ZSI9 719 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 VN1R4Q7Z5H5 301 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 C7orf57Q8NEG2 295 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 NACC2Q96BF6 587 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 ZNF578Q96N58 590 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-202ENST00000394943 TMEM237Q96Q45 408 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 NPLQ9BXD5 320 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-202ENST00000394943 OSGEPL1Q9H4B0 414 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 ALG9Q9H6U8 611 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 ZNF358Q9NW07 568 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 PLCL2Q9UPR0 1127 aa6.73□□□□□ -1.33
LIMA1-202ENST00000394943 UQCRHLA0A096LP55 91 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 UBXN8O00124 270 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 RGS16O15492 202 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-202ENST00000394943 SNRNP200O75643 2136 aaKnown RBP6.72□□□□□ -1.33
LIMA1-202ENST00000394943 SEMA3DO95025 777 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 MLYCDO95822 493 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 UQCRHP07919 91 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 HIST1H2AGP0C0S8 130 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-202ENST00000394943 HIST1H2ADP20671 130 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 ALDH3A1P30838 453 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 PGGT1BP53609 377 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 WDR4P57081 412 aaKnown RBP6.72□□□□□ -1.33
LIMA1-202ENST00000394943 CUL3Q13618 768 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 PDK4Q16654 411 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 XKR7Q5GH72 579 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 TCTE1Q5JU00 501 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 HES3Q5TGS1 186 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 GOLGA7Q7Z5G4 137 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 TRIM48Q8IWZ4 208 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 FKBP10Q96AY3 582 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 HIST1H2AHQ96KK5 128 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 TAAR9Q96RI9 348 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 HIST1H2AJQ99878 128 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 H2AFJQ9BTM1 129 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 ZNF717Q9BY31 904 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-202ENST00000394943 TMEM45AQ9NWC5 275 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 HRASLS2Q9NWW9 162 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 BLACEA4D250 179 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 VSTM2BA6NLU5 285 aa6.72□□□□□ -1.33
LIMA1-202ENST00000394943 GIPC1O14908 333 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms