RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 H0YAE9 185 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 CXCR6O00574 342 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 PER2O15055 1255 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 CNOT3O75175 753 aaKnown RBP9.37□□□□□ -0.91
COL6A3-204ENST00000392003 SNAP29O95721 258 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 OCM2P0CE71 109 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 OCMP0CE72 109 aaPredicted RBP9.37□□□□□ -0.91
COL6A3-204ENST00000392003 ATP1B2P14415 290 aaPredicted RBP9.37□□□□□ -0.91
COL6A3-204ENST00000392003 AOAHP28039 575 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 HLA-FP30511 346 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 PTSQ03393 145 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 ZIK1Q3SY52 487 aaPredicted RBP9.37□□□□□ -0.91
COL6A3-204ENST00000392003 GDPD4Q6W3E5 623 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 MICU2Q8IYU8 434 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 KRTCAP2Q8N6L1 136 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 NUDT8Q8WV74 236 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 ELMO1Q92556 727 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 TCEAL4Q96EI5 215 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 SLC47A1Q96FL8 570 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 CCDC115Q96NT0 180 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 TSSK3Q96PN8 268 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 CLMPQ9H6B4 373 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 RC3H2Q9HBD1 1191 aaKnown RBP9.37□□□□□ -0.91
COL6A3-204ENST00000392003 TDP1Q9NUW8 608 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 DNAJB9Q9UBS3 223 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 ATPIF1Q9UII2 106 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 SPEF1Q9Y4P9 236 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 EVPLLA8MZ36 301 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 DLGAP1O14490 977 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 ZNF821O75541 412 aaPredicted RBP9.37□□□□□ -0.91
COL6A3-204ENST00000392003 CLIC3O95833 236 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 CST1P01037 141 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 PDYNP01213 254 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 THRBP10828 461 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 HOXB6P17509 224 aaKnown RBP9.37□□□□□ -0.91
COL6A3-204ENST00000392003 ALDH3A2P51648 485 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 AP1S2P56377 157 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 NTHL1P78549 312 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 EPS8Q12929 822 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 SP140Q13342 867 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 CBX2Q14781 532 aaPredicted RBP9.37□□□□□ -0.91
COL6A3-204ENST00000392003 PTCHD3Q3KNS1 767 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 LRRC73Q5JTD7 316 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 PLEKHS1Q5SXH7 462 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 ATG9BQ674R7 924 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 Q6ZVU0 165 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 GLRX5Q86SX6 157 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 ZNF555Q8NEP9 628 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 FLCNQ8NFG4 579 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 TMIGD2Q96BF3 282 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 ECHDC3Q96DC8 303 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 MCCC1Q96RQ3 725 aaPredicted RBP9.37□□□□□ -0.91
COL6A3-204ENST00000392003 FAM83DQ9H4H8 585 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 KLHL3Q9UH77 587 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 CD84Q9UIB8 345 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 PPIL1Q9Y3C6 166 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 ORC6Q9Y5N6 252 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 G3V2T6 193 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 SLC16A5O15375 505 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 NUAK1O60285 661 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 RECQL5O94762 991 aaPredicted RBP9.37□□□□□ -0.91
COL6A3-204ENST00000392003 KRT75O95678 551 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 FGF19O95750 216 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 FTH1P02794 183 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 RHOP08100 348 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 ZNF30P17039 623 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 CTRB1P17538 263 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 LHCGRP22888 699 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 ARSFP54793 590 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 CLDN8P56748 225 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 AAK1Q2M2I8 961 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 ZBED5Q49AG3 693 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 SYTL3Q4VX76 610 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 RUNDC3AQ59EK9 446 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 CCNYL2Q5T2Q4 361 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 TTC23Q5W5X9 447 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 CTRB2Q6GPI1 263 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 RFLNAQ6ZTI6 216 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 GPR180Q86V85 440 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 TMEM25Q86YD3 366 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 TMC8Q8IU68 726 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 ERI1Q8IV48 349 aaKnown RBP9.37□□□□□ -0.91
COL6A3-204ENST00000392003 ADHFE1Q8IWW8 467 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 RIMKLAQ8IXN7 391 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 LILRB4Q8NHJ6 448 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 ASZ1Q8WWH4 475 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 CMTM7Q96FZ5 175 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 TIMMDC1Q9NPL8 285 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 RAD18Q9NS91 495 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 CRNNQ9UBG3 495 aaPredicted RBP9.37□□□□□ -0.91
COL6A3-204ENST00000392003 FAM8A1Q9UBU6 413 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 SLCO3A1Q9UIG8 710 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 CCL26Q9Y258 94 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 TANC1Q9C0D5 1861 aa9.37□□□□□ -0.91
COL6A3-204ENST00000392003 BPTFQ12830 3046 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 PSMD11O00231 422 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 QSOX1O00391 747 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 C1SP09871 688 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 ITPKAP23677 461 aa9.36□□□□□ -0.91
COL6A3-204ENST00000392003 GGT5P36269 586 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms