RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 PER2O15055 1255 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 KIAA0355O15063 1070 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 RETP07949 1114 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 HTR1AP08908 422 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 PTPN2P17706 415 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 CYP2A7P20853 494 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 LBX1P52954 281 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 NAE1Q13564 534 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 MAP7Q14244 749 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 CCNYL2Q5T2Q4 361 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 TTC23LQ6PF05 361 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 LIPIQ6XZB0 460 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 GPR141Q7Z602 305 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 GPR180Q86V85 440 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 ZDHHC13Q8IUH4 622 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 RAVER1Q8IY67 606 aaKnown RBP12.95□□□□□ -0.34
CCDC3-202ENST00000378839 ALDH16A1Q8IZ83 802 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 AADATQ8N5Z0 425 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 PJA1Q8NG27 643 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 PNPT1Q8TCS8 783 aaKnown RBP12.95□□□□□ -0.34
CCDC3-202ENST00000378839 ASZ1Q8WWH4 475 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 NXPE3Q969Y0 559 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 FAM83CQ9BQN1 747 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 EMILIN2Q9BXX0 1053 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 POLR1BQ9H9Y6 1135 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 SPATA6Q9NWH7 488 aaPredicted RBP12.95□□□□□ -0.34
CCDC3-202ENST00000378839 ABCG2Q9UNQ0 655 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 PCYT1BQ9Y5K3 369 aaPredicted RBP12.95□□□□□ -0.34
CCDC3-202ENST00000378839 SLC5A10A0PJK1 596 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 SERTM1A2A2V5 107 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 AXIN1O15169 862 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 MITFO75030 526 aaPredicted RBP12.95□□□□□ -0.34
CCDC3-202ENST00000378839 LAMP1P11279 417 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 AGXTP21549 392 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 IMPA1P29218 277 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 PBLDP30039 288 aaPredicted RBP12.95□□□□□ -0.34
CCDC3-202ENST00000378839 MMP12P39900 470 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 CRYBA2P53672 197 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 IRF8Q02556 426 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 SPIDRQ14159 915 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 XAF1Q6GPH4 301 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 AGTRAPQ6RW13 159 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 SPESP1Q6UW49 350 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 TMEM26Q6ZUK4 368 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 PTOV1Q86YD1 416 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 ERI1Q8IV48 349 aaKnown RBP12.95□□□□□ -0.34
CCDC3-202ENST00000378839 HOMEZQ8IX15 550 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 POF1BQ8WVV4 589 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 MED8Q96G25 268 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 FAM210AQ96ND0 272 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 NRTNQ99748 197 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 CXorf21Q9HAI6 301 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 EXO1Q9UQ84 846 aaKnown RBP12.95□□□□□ -0.34
CCDC3-202ENST00000378839 SPTBN5Q9NRC6 3674 aaKnown RBP12.95□□□□□ -0.34
CCDC3-202ENST00000378839 MAGEB17A8MXT2 336 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 RFXANKO14593 260 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 KCNK5O95279 499 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 STT3AP46977 705 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 HLCSP50747 726 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 EMP3P54852 163 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 AP1S2P56377 157 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 NEDD8Q15843 81 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 MEP1AQ16819 746 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 ZNF805Q5CZA5 627 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 NEK10Q6ZWH5 1172 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 CEP68Q76N32 757 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 DPPA4Q7L190 304 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 SPPL3Q8TCT6 385 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 GAB3Q8WWW8 586 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 GLYATL1Q969I3 302 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 REXO5Q96IC2 774 aaKnown RBP12.95□□□□□ -0.34
CCDC3-202ENST00000378839 AASSQ9UDR5 926 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 VPS4AQ9UN37 437 aa12.95□□□□□ -0.34
CCDC3-202ENST00000378839 LRRK1Q38SD2 2015 aa12.94□□□□□ -0.34
CCDC3-202ENST00000378839 WNT9AO14904 365 aa12.94□□□□□ -0.34
CCDC3-202ENST00000378839 ZSCAN9O15535 394 aaPredicted RBP12.94□□□□□ -0.34
CCDC3-202ENST00000378839 DIRAS1O95057 198 aa12.94□□□□□ -0.34
CCDC3-202ENST00000378839 NUDT7P0C024 238 aa12.94□□□□□ -0.34
CCDC3-202ENST00000378839 CYP2A6P11509 494 aaPredicted RBP12.94□□□□□ -0.34
CCDC3-202ENST00000378839 CD247P20963 164 aa12.94□□□□□ -0.34
CCDC3-202ENST00000378839 MATN1P21941 496 aa12.94□□□□□ -0.34
CCDC3-202ENST00000378839 RECQLP46063 649 aaPredicted RBP12.94□□□□□ -0.34
CCDC3-202ENST00000378839 TMEM115Q12893 351 aaPredicted RBP12.94□□□□□ -0.34
CCDC3-202ENST00000378839 KCNAB2Q13303 367 aa12.94□□□□□ -0.34
CCDC3-202ENST00000378839 GPR107Q5VW38 600 aa12.94□□□□□ -0.34
CCDC3-202ENST00000378839 TMEM132CQ8N3T6 1108 aa12.94□□□□□ -0.34
CCDC3-202ENST00000378839 C11orf49Q9H6J7 331 aa12.94□□□□□ -0.34
CCDC3-202ENST00000378839 ATXN10Q9UBB4 475 aa12.94□□□□□ -0.34
CCDC3-202ENST00000378839 H3BMQ9 156 aa12.94□□□□□ -0.34
CCDC3-202ENST00000378839 ENGP17813 658 aa12.94□□□□□ -0.34
CCDC3-202ENST00000378839 MAPK10P53779 464 aa12.94□□□□□ -0.34
CCDC3-202ENST00000378839 DHCR24Q15392 516 aa12.94□□□□□ -0.34
CCDC3-202ENST00000378839 FBXO46Q6PJ61 603 aaPredicted RBP12.94□□□□□ -0.34
CCDC3-202ENST00000378839 VTCN1Q7Z7D3 282 aa12.94□□□□□ -0.34
CCDC3-202ENST00000378839 ZZZ3Q8IYH5 903 aa12.94□□□□□ -0.34
CCDC3-202ENST00000378839 PYURFQ96I23 114 aa12.94□□□□□ -0.34
CCDC3-202ENST00000378839 COG8Q96MW5 612 aa12.94□□□□□ -0.34
CCDC3-202ENST00000378839 SH3GL1Q99961 368 aa12.94□□□□□ -0.34
CCDC3-202ENST00000378839 PRRT4C9JH25 899 aa12.93□□□□□ -0.34
CCDC3-202ENST00000378839 LILRB5O75023 590 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms