RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 C2P06681 752 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 F8A1P23610 371 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 GCAP28676 217 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 KCNC1P48547 511 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 TMPRSS3P57727 454 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 VSX2P58304 361 aaPredicted RBP12.81□□□□□ -0.36
VPS28-202ENST00000377348 ATP6V0D1P61421 351 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 ABATP80404 500 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 ABHD18Q0P651 414 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 MAP7Q14244 749 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 TGFBIQ15582 683 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 PTCHD3Q3KNS1 767 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 FBXO48Q5FWF7 155 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 ZNF425Q6IV72 752 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 CAPN13Q6MZZ7 669 aaPredicted RBP12.81□□□□□ -0.36
VPS28-202ENST00000377348 CCDC81Q6ZN84 652 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 RNF44Q7L0R7 432 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 TBC1D1Q86TI0 1168 aaPredicted RBP12.81□□□□□ -0.36
VPS28-202ENST00000377348 CENPLQ8N0S6 344 aaPredicted RBP12.81□□□□□ -0.36
VPS28-202ENST00000377348 OR4N4Q8N0Y3 316 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 EIF1ADQ8N9N8 165 aaKnown RBP12.81□□□□□ -0.36
VPS28-202ENST00000377348 EXT2Q93063 718 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 NXNL1Q96CM4 212 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 CLIP3Q96DZ5 547 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 PRAP1Q96NZ9 151 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 OR4K3Q96R72 315 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 RUFY1Q96T51 708 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 SGPP1Q9BX95 441 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 ALG9Q9H6U8 611 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 LHX9Q9NQ69 397 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 PCMTD2Q9NV79 361 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 DHCR7Q9UBM7 475 aaKnown RBP12.81□□□□□ -0.36
VPS28-202ENST00000377348 IL17BQ9UHF5 180 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 CROTQ9UKG9 612 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 MRPS18BQ9Y676 258 aaKnown RBP12.81□□□□□ -0.36
VPS28-202ENST00000377348 IKBKGQ9Y6K9 419 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 CHD6Q8TD26 2715 aa12.81□□□□□ -0.36
VPS28-202ENST00000377348 A0A096LPK6 155 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 TRIM49D1C9J1S8 452 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 HAT1O14929 419 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 ZSCAN9O15535 394 aaPredicted RBP12.8□□□□□ -0.36
VPS28-202ENST00000377348 MT-ND3P03897 115 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 EIF2S1P05198 315 aaKnown RBP12.8□□□□□ -0.36
VPS28-202ENST00000377348 ANXA5P08758 320 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 LTA4HP09960 611 aaKnown RBP12.8□□□□□ -0.36
VPS28-202ENST00000377348 CCNYL3P0C7X3 344 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 NPPBP16860 134 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 TFEBP19484 476 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 TYK2P29597 1187 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 RORAP35398 523 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 SERPINB8P50452 374 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 SERPINB9P50453 376 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 CDKL1Q00532 357 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 ZC3H12BQ5HYM0 836 aaKnown RBP12.8□□□□□ -0.36
VPS28-202ENST00000377348 C1orf189Q5VU69 101 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 LCTLQ6UWM7 567 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 GPSM1Q86YR5 675 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 DSELQ8IZU8 1212 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 CT55Q8WUE5 264 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 ATL1Q8WXF7 558 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 MR1Q95460 341 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 KIAA1191Q96A73 305 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 ESAMQ96AP7 390 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 ZFYVE21Q9BQ24 234 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 SELENOSQ9BQE4 189 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 SLC7A5P2Q9GIP4 190 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 PCBD2Q9H0N5 130 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 VPS11Q9H270 941 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 PRORYQ9H606 182 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 GPN2Q9H9Y4 310 aaPredicted RBP12.8□□□□□ -0.36
VPS28-202ENST00000377348 ANKMY1Q9P2S6 941 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 ZNF180Q9UJW8 692 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 TLK1Q9UKI8 766 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 PADI1Q9ULC6 663 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 RNF112Q9ULX5 631 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 SNX7Q9UNH6 387 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 ACOT9Q9Y305 439 aa12.8□□□□□ -0.36
VPS28-202ENST00000377348 PCM1Q15154 2024 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 A0A087X1B8 175 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 H0YGG7 62 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 K7ENP7 123 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 MEN1O00255 615 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 TAPBPO15533 448 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 KRT38O76015 456 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 STATHP02808 62 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 CDH1P12830 882 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 TCN2P20062 427 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 CCND1P24385 295 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 DLSTP36957 453 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 GDF5P43026 501 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 MAGEA12P43365 314 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 GLRBP48167 497 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 UCNP55089 124 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 ARF3P61204 181 aaPredicted RBP12.79□□□□□ -0.36
VPS28-202ENST00000377348 CYP4F2P78329 520 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 CSNK1G2P78368 415 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 VAC14Q08AM6 782 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 NAA25Q14CX7 972 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 ERCC6LQ2NKX8 1250 aa12.79□□□□□ -0.36
VPS28-202ENST00000377348 TAF1BQ53T94 588 aaPredicted RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms