RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 RCOR3Q9P2K3 495 aaPredicted RBP13.39□□□□□ -0.27
COL4A1-201ENST00000375820 KANTRA0A1W2PQU2 76 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 K7EPI3 171 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 TLR4O00206 839 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 HCKP08631 526 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 JAM2P57087 298 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 RPS3AP61247 264 aaKnown RBP13.38□□□□□ -0.27
COL4A1-201ENST00000375820 MLLT1Q03111 559 aaPredicted RBP13.38□□□□□ -0.27
COL4A1-201ENST00000375820 DSC3Q14574 896 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 PRKD1Q15139 912 aaPredicted RBP13.38□□□□□ -0.27
COL4A1-201ENST00000375820 NPTX1Q15818 432 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 SIRPB2Q5JXA9 342 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 LGI4Q8N135 537 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 ANKRA2Q9H9E1 313 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.38□□□□□ -0.27
COL4A1-201ENST00000375820 VWDEQ8N2E2 1590 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 SAGE2PA6NJ88 616 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 CLDN25C9JDP6 229 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 CDC123O75794 336 aaPredicted RBP13.38□□□□□ -0.27
COL4A1-201ENST00000375820 CFHP08603 1231 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 ACVRL1P37023 503 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 PTGIRP43119 386 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 DSTNP60981 165 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 AP1S1P61966 158 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 MPP2Q14168 576 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 FAM92BQ6ZTR7 304 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 PLA2G15Q8NCC3 412 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 TSTD1Q8NFU3 115 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 ROPN1LQ96C74 230 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 SH3YL1Q96HL8 342 aaPredicted RBP13.38□□□□□ -0.27
COL4A1-201ENST00000375820 MIPEPQ99797 713 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 CXorf49A8MYA2 514 aaPredicted RBP13.38□□□□□ -0.27
COL4A1-201ENST00000375820 MMP20O60882 483 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 MRPL3P09001 348 aaKnown RBP13.38□□□□□ -0.27
COL4A1-201ENST00000375820 PRPS2P11908 318 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 PRKACGP22612 351 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 S100A2P29034 98 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 GKP32189 559 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 CCNFP41002 786 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 TAS2R50P59544 299 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 RAB8AP61006 207 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 THOC7Q6I9Y2 204 aaKnown RBP13.38□□□□□ -0.27
COL4A1-201ENST00000375820 GATSQ8NAP1 163 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 INO80EQ8NBZ0 244 aaPredicted RBP13.38□□□□□ -0.27
COL4A1-201ENST00000375820 NXPE2Q96DL1 559 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 OAZ3Q9UMX2 235 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 KCNK6Q9Y257 313 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 WASH3PC4AMC7 463 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 ESR1P03372 595 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 KLHL22Q53GT1 634 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 SLC35F1Q5T1Q4 408 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 SUSD1Q6UWL2 747 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 IQCKQ8N0W5 287 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 DOK4Q8TEW6 326 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 AKTIPQ9H8T0 292 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 AJAP1Q9UKB5 411 aaPredicted RBP13.38□□□□□ -0.27
COL4A1-201ENST00000375820 PCDHGC3Q9UN70 934 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 SOWAHBA6NEL2 793 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 CLDN7O95471 211 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 OGNP20774 298 aaKnown RBP13.38□□□□□ -0.27
COL4A1-201ENST00000375820 SOWAHAQ2M3V2 549 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 LRRC69Q6ZNQ3 347 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 CCDC80Q76M96 950 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 POGLUT1Q8NBL1 392 aa13.38□□□□□ -0.27
COL4A1-201ENST00000375820 ZC3H10Q96K80 434 aaKnown RBP13.38□□□□□ -0.27
COL4A1-201ENST00000375820 NPIPA5E9PKD4 350 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 HAS3O00219 553 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 WNT9AO14904 365 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 CSTBP04080 98 aaKnown RBP13.37□□□□□ -0.27
COL4A1-201ENST00000375820 MEF2AQ02078 507 aaPredicted RBP13.37□□□□□ -0.27
COL4A1-201ENST00000375820 GRM2Q14416 872 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 CNPY1Q3B7I2 92 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 SLC10A6Q3KNW5 377 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 GDPD4Q6W3E5 623 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 SUN3Q8TAQ9 357 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 KCNA7Q96RP8 456 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 MUC13Q9H3R2 512 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 MEAF6Q9HAF1 191 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 BRF2Q9HAW0 419 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 NPIPA1Q9UND3 350 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 ATF6P18850 670 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 PTPRCAPQ14761 206 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 ATXN7L3Q14CW9 347 aaPredicted RBP13.37□□□□□ -0.27
COL4A1-201ENST00000375820 NOXRED1Q6NXP6 359 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 SYCE2Q6PIF2 218 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 GJD3Q8N144 294 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 ADAMTS13Q76LX8 1427 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 VILLO15195 856 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 ACOX3O15254 700 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 TUBG1P23258 451 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 RAB12Q6IQ22 244 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 LMX1AQ8TE12 382 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 DNAJB9Q9UBS3 223 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 SSX5O60225 188 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 RGS19P49795 217 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 ARPC4P59998 168 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 PRAMEF14Q5SWL7 426 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 PRAMEF13Q5VWM6 474 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 SLC29A4Q7RTT9 530 aa13.37□□□□□ -0.27
COL4A1-201ENST00000375820 SLITRK4Q8IW52 837 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms