RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 SFT2D3Q587I9 215 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 SPANXN4Q5MJ08 99 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 ZCCHC12Q6PEW1 402 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 GDPD4Q6W3E5 623 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 PRR23CQ6ZRP0 262 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 SH3RF2Q8TEC5 729 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 BHLHE41Q9C0J9 482 aaPredicted RBP11.14□□□□□ -0.63
PTPRF-203ENST00000372407 PHF24Q9UPV7 400 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 A0A0G2JN53 185 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 LOC100130705A0A1B0GUX0 176 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 SAP18O00422 153 aaKnown RBP11.14□□□□□ -0.63
PTPRF-203ENST00000372407 AKAP8O43823 692 aaKnown RBP11.14□□□□□ -0.63
PTPRF-203ENST00000372407 SERPINA3P01011 423 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 G6PDP11413 515 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 CCR8P51685 355 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 OR2B6P58173 313 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 DCDC1P59894 354 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 IDNKQ5T6J7 187 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 BRAT1Q6PJG6 821 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 TMEM126BQ8IUX1 230 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 LINC00471Q8N535 108 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 ING5Q8WYH8 240 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 SMOQ99835 787 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 SLC22A4Q9H015 551 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 CCSER2Q9H7U1 834 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 RMI1Q9H9A7 625 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 TPT1P8Q9HAU6 139 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 FAM120CQ9NX05 1096 aaKnown RBP11.14□□□□□ -0.63
PTPRF-203ENST00000372407 FAM53CQ9NYF3 392 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 P2RX2Q9UBL9 471 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 UPB1Q9UBR1 384 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 NRAPQ86VF7 1730 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 PRSS51A0A1B0GVH4 220 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 TRBC2A0A5B9 178 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 TTC24A2A3L6 582 aaPredicted RBP11.14□□□□□ -0.63
PTPRF-203ENST00000372407 B3GALT2O43825 422 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 SEMA3DO95025 777 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 INMTO95050 263 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 KCNQ1P51787 676 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 NCBP2P52298 156 aaKnown RBP eCLIP11.14□□□□□ -0.63
PTPRF-203ENST00000372407 TUBA1BP68363 451 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 OLIG2Q13516 323 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 DUOXA1Q1HG43 343 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 PTCHD3Q3KNS1 767 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 PRAMEF14Q5SWL7 426 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 PRAMEF13Q5VWM6 474 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 TUBA1AQ71U36 451 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 FAM129CQ86XR2 697 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 TREML1Q86YW5 311 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 OR6K6Q8NGW6 343 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 SLC22A18Q96BI1 424 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 BORCS6Q96GS4 357 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 TMEM74Q96NL1 305 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 PEBP4Q96S96 227 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 SGIP1Q9BQI5 828 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 MGME1Q9BQP7 344 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 SEZ6LQ9BYH1 1024 aa11.14□□□□□ -0.63
PTPRF-203ENST00000372407 FBRSL1Q9HCM7 1045 aaKnown RBP11.14□□□□□ -0.63
PTPRF-203ENST00000372407 MRPS30Q9NP92 439 aaKnown RBP11.14□□□□□ -0.63
PTPRF-203ENST00000372407 BHMG1C9JSJ3 638 aaPredicted RBP11.13□□□□□ -0.63
PTPRF-203ENST00000372407 WRBO00258 174 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 PRKCGP05129 697 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 EBLN1P0CF75 366 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 GSTT2BP0CG30 244 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 CBSLP0DN79 551 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 DDX6P26196 483 aaKnown RBP eCLIP11.13□□□□□ -0.635e-18■□□□□ 9.4
PTPRF-203ENST00000372407 CBSP35520 551 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 GNALP38405 381 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 SLC15A1P46059 708 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 ACADVLP49748 655 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 CAMK1Q14012 370 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 TPRG1Q6ZUI0 275 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 OSTM1Q86WC4 334 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 ZUFSPQ96AP4 578 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 PYURFQ96I23 114 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 PKP4Q99569 1192 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 ZSCAN5AQ9BUG6 496 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 ABCG4Q9H172 646 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 NSUN3Q9H649 340 aaKnown RBP11.13□□□□□ -0.63
PTPRF-203ENST00000372407 RPF2Q9H7B2 306 aaKnown RBP11.13□□□□□ -0.63
PTPRF-203ENST00000372407 ZNF224Q9NZL3 707 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 SCML2Q9UQR0 700 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 YIPF1Q9Y548 306 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 ABCA3Q99758 1704 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.13□□□□□ -0.63
PTPRF-203ENST00000372407 OR14I1A6ND48 311 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 TLR4O00206 839 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 MID1O15344 667 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 FGF3P11487 239 aaPredicted RBP11.13□□□□□ -0.63
PTPRF-203ENST00000372407 ZNF823P16415 610 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 AVPR1BP47901 424 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 MASP1P48740 699 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 DNAJB13P59910 316 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 RAB2AP61019 212 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 JAG1P78504 1218 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 PITPNAQ00169 270 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 PDCD4Q53EL6 469 aaKnown RBP11.13□□□□□ -0.63
PTPRF-203ENST00000372407 KIAA1161Q6NSJ0 714 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 IQCHQ86VS3 1027 aa11.13□□□□□ -0.63
PTPRF-203ENST00000372407 KLHL36Q8N4N3 616 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms