RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 KDM4BO94953 1096 aa15.52■□□□□ 0.07
COL17A1-202ENST00000369733 TBX18O95935 607 aa15.52■□□□□ 0.07
COL17A1-202ENST00000369733 DNTTP04053 509 aa15.52■□□□□ 0.07
COL17A1-202ENST00000369733 ITGA3P26006 1051 aa15.52■□□□□ 0.07
COL17A1-202ENST00000369733 RELAQ04206 551 aa15.52■□□□□ 0.07
COL17A1-202ENST00000369733 NFKBIDQ8NI38 313 aa15.52■□□□□ 0.07
COL17A1-202ENST00000369733 WACQ9BTA9 647 aa15.52■□□□□ 0.07
COL17A1-202ENST00000369733 RNF11Q9Y3C5 154 aa15.52■□□□□ 0.07
COL17A1-202ENST00000369733 AKAP8O43823 692 aaKnown RBP15.52■□□□□ 0.07
COL17A1-202ENST00000369733 H1F0P07305 194 aaKnown RBP15.52■□□□□ 0.07
COL17A1-202ENST00000369733 KHKP50053 298 aa15.52■□□□□ 0.07
COL17A1-202ENST00000369733 CLEC12AQ5QGZ9 265 aa15.52■□□□□ 0.07
COL17A1-202ENST00000369733 PHYKPLQ8IUZ5 450 aa15.52■□□□□ 0.07
COL17A1-202ENST00000369733 ADGRG2Q8IZP9 1017 aa15.52■□□□□ 0.07
COL17A1-202ENST00000369733 GHDCQ8N2G8 530 aa15.52■□□□□ 0.07
COL17A1-202ENST00000369733 TPT1P8Q9HAU6 139 aa15.52■□□□□ 0.07
COL17A1-202ENST00000369733 NECTIN3Q9NQS3 549 aa15.52■□□□□ 0.07
COL17A1-202ENST00000369733 MS4A12Q9NXJ0 267 aa15.52■□□□□ 0.07
COL17A1-202ENST00000369733 STOMP27105 288 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 ACVRL1P37023 503 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 SWI5Q1ZZU3 235 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 LCN8Q6JVE9 175 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 OSTM1Q86WC4 334 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 PLD4Q96BZ4 506 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 MYRFLQ96LU7 910 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 MGME1Q9BQP7 344 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 GRIP1Q9Y3R0 1128 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 CEPT1Q9Y6K0 416 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 ARVCFO00192 962 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 RFPL2O75678 378 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 ASGR1P07306 291 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 CD1DP15813 335 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 LEPRP48357 1165 aaKnown RBP15.51■□□□□ 0.07
COL17A1-202ENST00000369733 PRR5P85299 388 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 CDKL1Q00532 357 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 RANBP3LQ86VV4 465 aaPredicted RBP15.51■□□□□ 0.07
COL17A1-202ENST00000369733 MTMR14Q8NCE2 650 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 OR4C6Q8NH72 309 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 TMEM246Q9BRR3 403 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 BRINP2Q9C0B6 783 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 LHPPQ9H008 270 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 ELL3Q9HB65 397 aaPredicted RBP15.51■□□□□ 0.07
COL17A1-202ENST00000369733 FKBP7Q9Y680 259 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 GCAP28676 217 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 CRISP3P54108 245 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 PTPRCAPQ14761 206 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 CCBE1Q6UXH8 406 aaPredicted RBP15.51■□□□□ 0.07
COL17A1-202ENST00000369733 C1orf52Q8N6N3 182 aaKnown RBP15.51■□□□□ 0.07
COL17A1-202ENST00000369733 ZBED6CLQ96FA7 236 aaPredicted RBP15.51■□□□□ 0.07
COL17A1-202ENST00000369733 NPLQ9BXD5 320 aaPredicted RBP15.51■□□□□ 0.07
COL17A1-202ENST00000369733 KDM3BQ7LBC6 1761 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 A0A0X1KG70 313 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 OR1F1O43749 312 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 GRIN3BO60391 1043 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 SEMG2Q02383 582 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 CLCA4Q14CN2 919 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 CYBRD1Q53TN4 286 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 USP50Q70EL3 339 aaPredicted RBP15.51■□□□□ 0.07
COL17A1-202ENST00000369733 HIST2H2ABQ8IUE6 130 aaPredicted RBP15.51■□□□□ 0.07
COL17A1-202ENST00000369733 BPIFB1Q8TDL5 484 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 UPF1Q92900 1129 aaKnown RBP eCLIP15.51■□□□□ 0.07
COL17A1-202ENST00000369733 DHRS4Q9BTZ2 278 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 NSUN3Q9H649 340 aaKnown RBP15.51■□□□□ 0.07
COL17A1-202ENST00000369733 SPATA7Q9P0W8 599 aa15.51■□□□□ 0.07
COL17A1-202ENST00000369733 G3V2L1 256 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 EBLN1P0CF75 366 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 OR4D2P58180 307 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 CDK6Q00534 326 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 ST3GAL4Q11206 333 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 GPR33Q49SQ1 333 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 VARS2Q5ST30 1063 aaKnown RBP15.5■□□□□ 0.07
COL17A1-202ENST00000369733 BLOC1S3Q6QNY0 202 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 CTU1Q7Z7A3 348 aaKnown RBP15.5■□□□□ 0.07
COL17A1-202ENST00000369733 IFT27Q9BW83 186 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 SMIM30A4D0T7 59 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 FAM72CH0Y354 149 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 ENTPD6O75354 484 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 ALPIP09923 528 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 RPS3P23396 243 aaKnown RBP eCLIP15.5■□□□□ 0.07
COL17A1-202ENST00000369733 SF1Q15637 639 aaKnown RBP15.5■□□□□ 0.07
COL17A1-202ENST00000369733 FAM72AQ5TYM5 149 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 FAM72DQ6L9T8 149 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 ZNF367Q7RTV3 350 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 FAM72BQ86X60 149 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 CADM2Q8N3J6 435 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 ALPK1Q96QP1 1244 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 ASPNQ9BXN1 380 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 AIG1Q9NVV5 245 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 FAM120CQ9NX05 1096 aaKnown RBP15.5■□□□□ 0.07
COL17A1-202ENST00000369733 UPB1Q9UBR1 384 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 SLC22A14Q9Y267 594 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 SLC1A7O00341 560 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 PLSCR1O15162 318 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 SERPINA3P01011 423 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 DEFA5Q01523 94 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 RPL6Q02878 288 aaKnown RBP15.5■□□□□ 0.07
COL17A1-202ENST00000369733 CREB5Q02930 508 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 TMEM220Q6QAJ8 160 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 SYVN1Q86TM6 617 aa15.5■□□□□ 0.07
COL17A1-202ENST00000369733 PHC2Q8IXK0 858 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms