RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 TMEM115Q12893 351 aaPredicted RBP18.75■□□□□ 0.59
COL9A3-201ENST00000343916 NEK10Q6ZWH5 1172 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 TECPR1Q7Z6L1 1165 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 TRIM74Q86UV6 250 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 CLECL1Q8IZS7 167 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 LMNTD1Q8N9Z9 388 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 ST13P5Q8NFI4 369 aaPredicted RBP18.75■□□□□ 0.59
COL9A3-201ENST00000343916 PNPT1Q8TCS8 783 aaKnown RBP18.75■□□□□ 0.59
COL9A3-201ENST00000343916 CSGALNACT1Q8TDX6 532 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 SNRNP27Q8WVK2 155 aaKnown RBP18.75■□□□□ 0.59
COL9A3-201ENST00000343916 SGCDQ92629 289 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 GLYATL1Q969I3 302 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 C12orf43Q96C57 262 aaKnown RBP18.75■□□□□ 0.59
COL9A3-201ENST00000343916 AP2M1Q96CW1 435 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 REXO5Q96IC2 774 aaKnown RBP18.75■□□□□ 0.59
COL9A3-201ENST00000343916 HHIPQ96QV1 700 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 C11orf49Q9H6J7 331 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 VPS29Q9UBQ0 182 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 YY2O15391 372 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 CTNNB1P35222 781 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 IRS1P35568 1242 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 LIPJQ5W064 366 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 KLHL35Q6PF15 583 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 LIPIQ6XZB0 460 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 KIAA0907Q7Z7F0 614 aaPredicted RBP18.75■□□□□ 0.59
COL9A3-201ENST00000343916 C12orf40Q86WS4 652 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 RASGRP3Q8IV61 690 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 OR52E4Q8NGH9 312 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 DNAJB8Q8NHS0 232 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 MBOAT4Q96T53 435 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 DCUN1D5Q9BTE7 237 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 ADNPQ9H2P0 1102 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 FAM118AQ9NWS6 357 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 BTBD3Q9Y2F9 522 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 PCDHGA8Q9Y5G5 932 aa18.75■□□□□ 0.59
COL9A3-201ENST00000343916 KPNA3O00505 521 aaPredicted RBP18.74■□□□□ 0.59
COL9A3-201ENST00000343916 FPGTO14772 594 aa18.74■□□□□ 0.59
COL9A3-201ENST00000343916 WNT9AO14904 365 aa18.74■□□□□ 0.59
COL9A3-201ENST00000343916 ZNF682O95780 498 aa18.74■□□□□ 0.59
COL9A3-201ENST00000343916 COX7A2P14406 83 aa18.74■□□□□ 0.59
COL9A3-201ENST00000343916 DCTP40126 519 aa18.74■□□□□ 0.59
COL9A3-201ENST00000343916 ABHD18Q0P651 414 aa18.74■□□□□ 0.59
COL9A3-201ENST00000343916 LAPTM4AQ15012 233 aa18.74■□□□□ 0.59
COL9A3-201ENST00000343916 GPR107Q5VW38 600 aa18.74■□□□□ 0.59
COL9A3-201ENST00000343916 DUS1LQ6P1R4 473 aaKnown RBP18.74■□□□□ 0.59
COL9A3-201ENST00000343916 TMEM220Q6QAJ8 160 aa18.74■□□□□ 0.59
COL9A3-201ENST00000343916 ZNF621Q6ZSS3 439 aa18.74■□□□□ 0.59
COL9A3-201ENST00000343916 PARS2Q7L3T8 475 aaKnown RBP18.74■□□□□ 0.59
COL9A3-201ENST00000343916 DPH2Q9BQC3 489 aaPredicted RBP18.74■□□□□ 0.59
COL9A3-201ENST00000343916 CHCHD3Q9NX63 227 aaKnown RBP18.74■□□□□ 0.59
COL9A3-201ENST00000343916 INSL6Q9Y581 213 aa18.74■□□□□ 0.59
COL9A3-201ENST00000343916 MAGEB17A8MXT2 336 aa18.74■□□□□ 0.59
COL9A3-201ENST00000343916 HS6ST1O60243 411 aa18.74■□□□□ 0.59
COL9A3-201ENST00000343916 ATG13O75143 517 aa18.74■□□□□ 0.59
COL9A3-201ENST00000343916 CPSF4O95639 269 aaKnown RBP18.74■□□□□ 0.59
COL9A3-201ENST00000343916 ENGP17813 658 aa18.74■□□□□ 0.59
COL9A3-201ENST00000343916 PRPS1L1P21108 318 aa18.74■□□□□ 0.59
COL9A3-201ENST00000343916 IMPA1P29218 277 aa18.74■□□□□ 0.59
COL9A3-201ENST00000343916 MMP12P39900 470 aa18.74■□□□□ 0.59
COL9A3-201ENST00000343916 HLCSP50747 726 aa18.74■□□□□ 0.59
COL9A3-201ENST00000343916 WNT3P56703 355 aa18.74■□□□□ 0.59
COL9A3-201ENST00000343916 KCNAB2Q13303 367 aa18.74■□□□□ 0.59
COL9A3-201ENST00000343916 ZCCHC8Q6NZY4 707 aaKnown RBP18.74■□□□□ 0.59
COL9A3-201ENST00000343916 FAM9CQ8IZT9 166 aa18.74■□□□□ 0.59
COL9A3-201ENST00000343916 NELL1Q92832 810 aa18.74■□□□□ 0.59
COL9A3-201ENST00000343916 ERLEC1Q96DZ1 483 aa18.74■□□□□ 0.59
COL9A3-201ENST00000343916 PYURFQ96I23 114 aa18.74■□□□□ 0.59
COL9A3-201ENST00000343916 NAA50Q9GZZ1 169 aaKnown RBP18.74■□□□□ 0.59
COL9A3-201ENST00000343916 VNN3Q9NY84 501 aa18.74■□□□□ 0.59
COL9A3-201ENST00000343916 NPIPB8E9PQR5 432 aa18.73■□□□□ 0.59
COL9A3-201ENST00000343916 CLIC1O00299 241 aa18.73■□□□□ 0.59
COL9A3-201ENST00000343916 KIAA0355O15063 1070 aa18.73■□□□□ 0.59
COL9A3-201ENST00000343916 SCN2BO60939 215 aa18.73■□□□□ 0.59
COL9A3-201ENST00000343916 CEBPBP17676 345 aa18.73■□□□□ 0.59
COL9A3-201ENST00000343916 MTAPQ13126 283 aa18.73■□□□□ 0.59
COL9A3-201ENST00000343916 C16orf72Q14CZ0 275 aa18.73■□□□□ 0.59
COL9A3-201ENST00000343916 DPPA4Q7L190 304 aa18.73■□□□□ 0.59
COL9A3-201ENST00000343916 ADHFE1Q8IWW8 467 aa18.73■□□□□ 0.59
COL9A3-201ENST00000343916 ZCCHC7Q8N3Z6 543 aaKnown RBP18.73■□□□□ 0.59
COL9A3-201ENST00000343916 PKP4Q99569 1192 aa18.73■□□□□ 0.59
COL9A3-201ENST00000343916 SGK2Q9HBY8 427 aa18.73■□□□□ 0.59
COL9A3-201ENST00000343916 AASDHPPTQ9NRN7 309 aa18.73■□□□□ 0.59
COL9A3-201ENST00000343916 GULP1Q9UBP9 304 aa18.73■□□□□ 0.59
COL9A3-201ENST00000343916 FAF1Q9UNN5 650 aaPredicted RBP18.73■□□□□ 0.59
COL9A3-201ENST00000343916 AP3M1Q9Y2T2 418 aa18.73■□□□□ 0.59
COL9A3-201ENST00000343916 TSPAN11A1L157 253 aa18.73■□□□□ 0.59
COL9A3-201ENST00000343916 HPRP00739 348 aa18.73■□□□□ 0.59
COL9A3-201ENST00000343916 LAMP1P11279 417 aa18.73■□□□□ 0.59
COL9A3-201ENST00000343916 PRLHRP49683 370 aa18.73■□□□□ 0.59
COL9A3-201ENST00000343916 ACSM2AQ08AH3 577 aa18.73■□□□□ 0.59
COL9A3-201ENST00000343916 TSTA3Q13630 321 aaPredicted RBP18.73■□□□□ 0.59
COL9A3-201ENST00000343916 DHCR24Q15392 516 aa18.73■□□□□ 0.59
COL9A3-201ENST00000343916 DUOXA1Q1HG43 343 aa18.73■□□□□ 0.59
COL9A3-201ENST00000343916 ACSM2BQ68CK6 577 aa18.73■□□□□ 0.59
COL9A3-201ENST00000343916 THAP5Q7Z6K1 395 aa18.73■□□□□ 0.59
COL9A3-201ENST00000343916 RBM23Q86U06 439 aaKnown RBP18.73■□□□□ 0.59
COL9A3-201ENST00000343916 HOMEZQ8IX15 550 aa18.73■□□□□ 0.59
COL9A3-201ENST00000343916 C8orf59Q8N0T1 100 aaPredicted RBP18.73■□□□□ 0.59
COL9A3-201ENST00000343916 EID3Q8N140 333 aa18.73■□□□□ 0.59
COL9A3-201ENST00000343916 TIFAQ96CG3 184 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms