RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 INHBCP55103 352 aa21.32■■□□□ 1
SDC3-202ENST00000339394 GPS2Q13227 327 aa21.32■■□□□ 1
SDC3-202ENST00000339394 TRA2AQ13595 282 aaKnown RBP eCLIP21.32■■□□□ 1
SDC3-202ENST00000339394 ZIC1Q15915 447 aa21.32■■□□□ 1
SDC3-202ENST00000339394 UNC50Q53HI1 259 aa21.32■■□□□ 1
SDC3-202ENST00000339394 GOLGA7Q7Z5G4 137 aa21.32■■□□□ 1
SDC3-202ENST00000339394 MGARPQ8TDB4 240 aa21.32■■□□□ 1
SDC3-202ENST00000339394 SLC5A11Q8WWX8 675 aa21.32■■□□□ 1
SDC3-202ENST00000339394 KLHL6Q8WZ60 621 aa21.32■■□□□ 1
SDC3-202ENST00000339394 PRAP1Q96NZ9 151 aa21.32■■□□□ 1
SDC3-202ENST00000339394 NSUN5Q96P11 429 aaKnown RBP21.32■■□□□ 1
SDC3-202ENST00000339394 CAPS2Q9BXY5 557 aa21.32■■□□□ 1
SDC3-202ENST00000339394 GPRC5BQ9NZH0 403 aa21.32■■□□□ 1
SDC3-202ENST00000339394 ANGPTL3Q9Y5C1 460 aa21.32■■□□□ 1
SDC3-202ENST00000339394 KLK4Q9Y5K2 254 aa21.32■■□□□ 1
SDC3-202ENST00000339394 TRIM13O60858 407 aa21.31■■□□□ 1
SDC3-202ENST00000339394 CCKBRP32239 447 aa21.31■■□□□ 1
SDC3-202ENST00000339394 CDH13P55290 713 aa21.31■■□□□ 1
SDC3-202ENST00000339394 WDR4P57081 412 aaKnown RBP21.31■■□□□ 1
SDC3-202ENST00000339394 GTF2H2Q13888 395 aa21.31■■□□□ 1
SDC3-202ENST00000339394 ISXQ2M1V0 245 aa21.31■■□□□ 1
SDC3-202ENST00000339394 CATSPEREQ5SY80 951 aa21.31■■□□□ 1
SDC3-202ENST00000339394 FCRL6Q6DN72 434 aa21.31■■□□□ 1
SDC3-202ENST00000339394 GTF2H2CQ6P1K8 395 aa21.31■■□□□ 1
SDC3-202ENST00000339394 FIGLAQ6QHK4 219 aa21.31■■□□□ 1
SDC3-202ENST00000339394 DCBLD1Q8N8Z6 715 aa21.31■■□□□ 1
SDC3-202ENST00000339394 MDM1Q8TC05 714 aa21.31■■□□□ 1
SDC3-202ENST00000339394 PAIP2Q9BPZ3 127 aaKnown RBP21.31■■□□□ 1
SDC3-202ENST00000339394 ZBTB26Q9HCK0 441 aa21.31■■□□□ 1
SDC3-202ENST00000339394 WDR91A4D1P6 747 aa21.31■■□□□ 1
SDC3-202ENST00000339394 E7EQ34 232 aa21.31■■□□□ 1
SDC3-202ENST00000339394 H3BQF6 201 aa21.31■■□□□ 1
SDC3-202ENST00000339394 NRP2O60462 931 aa21.31■■□□□ 1
SDC3-202ENST00000339394 CSO75390 466 aaKnown RBP21.31■■□□□ 1
SDC3-202ENST00000339394 PIK3CGP48736 1102 aa21.31■■□□□ 1
SDC3-202ENST00000339394 PPP2R2AP63151 447 aa21.31■■□□□ 1
SDC3-202ENST00000339394 HSD11B2P80365 405 aa21.31■■□□□ 1
SDC3-202ENST00000339394 HHATQ5VTY9 493 aa21.31■■□□□ 1
SDC3-202ENST00000339394 TMPRSS12Q86WS5 348 aa21.31■■□□□ 1
SDC3-202ENST00000339394 CCNYL1Q8N7R7 359 aa21.31■■□□□ 1
SDC3-202ENST00000339394 C19orf47Q8N9M1 422 aaKnown RBP21.31■■□□□ 1
SDC3-202ENST00000339394 ABHD11Q8NFV4 315 aa21.31■■□□□ 1
SDC3-202ENST00000339394 PPP4R1Q8TF05 950 aa21.31■■□□□ 1
SDC3-202ENST00000339394 ZNF483Q8TF39 744 aaPredicted RBP21.31■■□□□ 1
SDC3-202ENST00000339394 SLC41A2Q96JW4 573 aa21.31■■□□□ 1
SDC3-202ENST00000339394 DEPDC7Q96QD5 511 aa21.31■■□□□ 1
SDC3-202ENST00000339394 IPPKQ9H8X2 491 aa21.31■■□□□ 1
SDC3-202ENST00000339394 AGRPO00253 132 aa21.3■■□□□ 1
SDC3-202ENST00000339394 KATNA1O75449 491 aa21.3■■□□□ 1
SDC3-202ENST00000339394 NELFEP18615 380 aaKnown RBP21.3■■□□□ 1
SDC3-202ENST00000339394 HRH2P25021 359 aa21.3■■□□□ 1
SDC3-202ENST00000339394 C16orf72Q14CZ0 275 aa21.3■■□□□ 1
SDC3-202ENST00000339394 ZNF425Q6IV72 752 aa21.3■■□□□ 1
SDC3-202ENST00000339394 NXPE4Q6UWF7 544 aa21.3■■□□□ 1
SDC3-202ENST00000339394 ADCK2Q7Z695 626 aa21.3■■□□□ 1
SDC3-202ENST00000339394 TMPRSS11BQ86T26 416 aa21.3■■□□□ 1
SDC3-202ENST00000339394 KMT5CQ86Y97 462 aa21.3■■□□□ 1
SDC3-202ENST00000339394 NUDCD3Q8IVD9 361 aa21.3■■□□□ 1
SDC3-202ENST00000339394 TCTN2Q96GX1 697 aa21.3■■□□□ 1
SDC3-202ENST00000339394 PLCD4Q9BRC7 762 aa21.3■■□□□ 1
SDC3-202ENST00000339394 GATA5Q9BWX5 397 aaPredicted RBP21.3■■□□□ 1
SDC3-202ENST00000339394 NOL11Q9H8H0 719 aaKnown RBP21.3■■□□□ 1
SDC3-202ENST00000339394 FAM60AQ9NP50 221 aa21.3■■□□□ 1
SDC3-202ENST00000339394 SEMA4BQ9NPR2 832 aaPredicted RBP21.3■■□□□ 1
SDC3-202ENST00000339394 TMEM184CQ9NVA4 438 aa21.3■■□□□ 1
SDC3-202ENST00000339394 SOHLH2Q9NX45 425 aa21.3■■□□□ 1
SDC3-202ENST00000339394 SNX7Q9UNH6 387 aa21.3■■□□□ 1
SDC3-202ENST00000339394 OR2A25A4D2G3 310 aa21.29■■□□□ 1
SDC3-202ENST00000339394 PPP6CO00743 305 aa21.29■■□□□ 1
SDC3-202ENST00000339394 BIRC5O15392 142 aa21.29■■□□□ 1
SDC3-202ENST00000339394 PRAMEF4O60810 478 aa21.29■■□□□ 1
SDC3-202ENST00000339394 JUPP14923 745 aa21.29■■□□□ 1
SDC3-202ENST00000339394 ARL4DP49703 201 aa21.29■■□□□ 1
SDC3-202ENST00000339394 CCR8P51685 355 aa21.29■■□□□ 1
SDC3-202ENST00000339394 CLCQ05315 142 aa21.29■■□□□ 1
SDC3-202ENST00000339394 NAA25Q14CX7 972 aa21.29■■□□□ 1
SDC3-202ENST00000339394 PRAMEF9Q5VWM5 478 aa21.29■■□□□ 1
SDC3-202ENST00000339394 SLCO4C1Q6ZQN7 724 aa21.29■■□□□ 1
SDC3-202ENST00000339394 PAQR7Q86WK9 346 aa21.29■■□□□ 1
SDC3-202ENST00000339394 D2HGDHQ8N465 521 aa21.29■■□□□ 1
SDC3-202ENST00000339394 OR4K1Q8NGD4 311 aa21.29■■□□□ 1
SDC3-202ENST00000339394 OR52B6Q8NGF0 335 aa21.29■■□□□ 1
SDC3-202ENST00000339394 PDE7BQ9NP56 450 aa21.29■■□□□ 1
SDC3-202ENST00000339394 BTRCQ9Y297 605 aa21.29■■□□□ 1
SDC3-202ENST00000339394 TMX2-CTNND1H3BSU7 103 aa21.28■■□□□ 1
SDC3-202ENST00000339394 OR7A17O14581 309 aa21.28■■□□□ 1
SDC3-202ENST00000339394 HGSO14964 777 aaPredicted RBP21.28■■□□□ 1
SDC3-202ENST00000339394 CLGNO14967 610 aa21.28■■□□□ 1
SDC3-202ENST00000339394 TSPAN8P19075 237 aa21.28■■□□□ 1
SDC3-202ENST00000339394 NR1D1P20393 614 aa21.28■■□□□ 1
SDC3-202ENST00000339394 VARSP26640 1264 aaKnown RBP21.28■■□□□ 1
SDC3-202ENST00000339394 CSTF2P33240 577 aaKnown RBP eCLIP21.28■■□□□ 1
SDC3-202ENST00000339394 ID4P47928 161 aa21.28■■□□□ 1
SDC3-202ENST00000339394 CSNK1G2P78368 415 aa21.28■■□□□ 1
SDC3-202ENST00000339394 PCDH1Q08174 1060 aa21.28■■□□□ 1
SDC3-202ENST00000339394 ASPHQ12797 758 aa21.28■■□□□ 1
SDC3-202ENST00000339394 TARDBPQ13148 414 aaKnown RBP eCLIP21.28■■□□□ 11e-7■■■■□ 24.2
SDC3-202ENST00000339394 CFAP157Q5JU67 520 aa21.28■■□□□ 1
SDC3-202ENST00000339394 CACTIN-AS1Q8N1I8 211 aa21.28■■□□□ 1
SDC3-202ENST00000339394 CHCHD4Q8N4Q1 142 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms