RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 SPTLC1O15269 473 aa10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 ERAL1O75616 437 aaKnown RBP10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 LATS1O95835 1130 aa10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 ATP5A1P25705 553 aaKnown RBP10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 GAS6Q14393 721 aa10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 SFT2D3Q587I9 215 aa10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 RABL3Q5HYI8 236 aa10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 CXorf57Q6NSI4 855 aaKnown RBP10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 OR8H3Q8N146 312 aa10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 SDR16C5Q8N3Y7 309 aa10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 TSEN15Q8WW01 171 aaKnown RBP10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 GTPBP2Q9BX10 602 aaKnown RBP10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 TNFRSF10DQ9UBN6 386 aa10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 TESMINQ9Y4I5 508 aa10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 ADAMTS7Q9UKP4 1686 aa10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 DAPL1A0PJW8 107 aa10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 B3GALT2O43825 422 aa10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 PGLSO95336 258 aa10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 NCK1P16333 377 aa10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 DUSP4Q13115 394 aa10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 SLC9A5Q14940 896 aa10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 CES5AQ6NT32 575 aa10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 FUT10Q6P4F1 479 aa10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 SHQ1Q6PI26 577 aaKnown RBP10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 HSH2DQ96JZ2 352 aa10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 TMEM175Q9BSA9 504 aa10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 PCM1Q15154 2024 aa10.02□□□□□ -0.8
CCDC88A-202ENST00000336838 PROX2Q3B8N5 592 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 FRRS1Q6ZNA5 592 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 PRSS48Q7RTY5 328 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 TXNDC5Q8NBS9 432 aaKnown RBP10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 XAGE5Q8WWM1 108 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 SMAD5Q99717 465 aaKnown RBP10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 TMEM39AQ9NV64 488 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 SSC5DA1L4H1 1573 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 A6NHS1 94 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 DNAJB6O75190 326 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 COQ9O75208 318 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 AHSGP02765 367 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 AQP1P29972 269 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 APLP1P51693 650 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 EIF4HQ15056 248 aaKnown RBP10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 OGFOD2Q6N063 350 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 FAM171BQ6P995 826 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 NPAS3Q8IXF0 933 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 OR10H5Q8NGA6 315 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 HEPHQ9BQS7 1158 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 CCM2Q9BSQ5 444 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 CD244Q9BZW8 370 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 MOXD2PA6NHM9 499 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 hCG_2039718K7EN88 272 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 PRODHO43272 600 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 OR1D2P34982 312 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 ZNF763Q0D2J5 394 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 ZNF384Q8TF68 577 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 TM9SF2Q99805 663 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 CNPPD1Q9BV87 410 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 MINDY3Q9H8M7 445 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 MGAT4AQ9UM21 535 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 CHRNA1P02708 482 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 ACVR2AP27037 513 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 NOVP48745 357 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 NCCRP1Q6ZVX7 275 aaPredicted RBP10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 TOMM5Q8N4H5 51 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 PSD4Q8NDX1 1056 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 SLC7A6OSQ96CW6 309 aaPredicted RBP10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 ZFP37Q9Y6Q3 630 aaPredicted RBP10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 LRP5O75197 1615 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 FAAHO00519 579 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 BUD23O43709 281 aaKnown RBP10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 CDK14O94921 469 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 IL7RP16871 459 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 SYT16Q17RD7 645 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 PAQR3Q6TCH7 311 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 OR10H4Q8NGA5 316 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 EXOC2Q96KP1 924 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 TCF7L1Q9HCS4 588 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 OARD1Q9Y530 152 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 MANBAO00462 879 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 UGDHO60701 494 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 RFC2P35250 354 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 GNG2P59768 71 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 ST3GAL3Q11203 375 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 SAPCD2Q86UD0 394 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 COPS5Q92905 334 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 LPPQ93052 612 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 LRIG1Q96JA1 1093 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 FERD3LQ96RJ6 166 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 ZNF224Q9NZL3 707 aa10.02□□□□□ -0.81
CCDC88A-202ENST00000336838 PIKFYVEQ9Y2I7 2098 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 ABHD14A-ACY1A0A1B0GW23 586 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 KANTRA0A1W2PQU2 76 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 SOBPA7XYQ1 873 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 COLEC12Q5KU26 742 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 PARP8Q8N3A8 854 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 KBTBD7Q8WVZ9 684 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 TCRBV7S3A2A0A539 114 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 FBP2O00757 339 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 BNIP3Q12983 259 aa10.01□□□□□ -0.81
CCDC88A-202ENST00000336838 TECRLQ5HYJ1 363 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms