RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 EXOSC4Q9NPD3 245 aaKnown RBP13.36□□□□□ -0.27
SYNE3-201ENST00000334258 IL1RAPQ9NPH3 570 aa13.36□□□□□ -0.27
SYNE3-201ENST00000334258 TMEM248Q9NWD8 314 aa13.36□□□□□ -0.27
SYNE3-201ENST00000334258 THUMPD1Q9NXG2 353 aaKnown RBP13.36□□□□□ -0.27
SYNE3-201ENST00000334258 MKLN1Q9UL63 735 aa13.36□□□□□ -0.27
SYNE3-201ENST00000334258 PCM1Q15154 2024 aa13.36□□□□□ -0.27
SYNE3-201ENST00000334258 MBLAC1A4D2B0 266 aaPredicted RBP13.35□□□□□ -0.27
SYNE3-201ENST00000334258 M0QZ92 97 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 M0R082 166 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 RFXANKO14593 260 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 CTDSP2O14595 271 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 MTRF1O75570 445 aaKnown RBP13.35□□□□□ -0.27
SYNE3-201ENST00000334258 SREBF2Q12772 1141 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 CAMK2GQ13555 558 aaPredicted RBP13.35□□□□□ -0.27
SYNE3-201ENST00000334258 CPSF6Q16630 551 aaKnown RBP eCLIP13.35□□□□□ -0.27
SYNE3-201ENST00000334258 ARMCX4Q5H9R4 360 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 TRAF7Q6Q0C0 670 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 SUSD1Q6UWL2 747 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 NRARPQ7Z6K4 114 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 CCDC71Q8IV32 467 aaPredicted RBP13.35□□□□□ -0.27
SYNE3-201ENST00000334258 CHPFQ8IZ52 775 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 RGL4Q8IZJ4 473 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 TEX26Q8N6G2 289 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 PAF1Q8N7H5 531 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 ZNF675Q8TD23 568 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 C1orf74Q96LT6 269 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 GIMAP4Q9NUV9 329 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 ERVW-1Q9UQF0 538 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 ZNF451Q9Y4E5 1061 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 PRUNE2Q8WUY3 3088 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 MYO7AQ13402 2215 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 KRT87PA6NCN2 255 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 PCP4L1A6NKN8 68 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 WASH4PA8MWX3 477 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 CCNDBP1O95273 360 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 EPOP01588 193 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 COL6A1P12109 1028 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 EFNA1P20827 205 aaPredicted RBP13.35□□□□□ -0.27
SYNE3-201ENST00000334258 AZGP1P25311 298 aaKnown RBP13.35□□□□□ -0.27
SYNE3-201ENST00000334258 HOXA9P31269 272 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 HTR3AP46098 478 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 VLDLRP98155 873 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 CEP78Q5JTW2 689 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 THEM5Q8N1Q8 247 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 CFAP52Q8N1V2 620 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 UTP15Q8TED0 518 aaKnown RBP13.35□□□□□ -0.27
SYNE3-201ENST00000334258 TSEN34Q9BSV6 310 aaKnown RBP13.35□□□□□ -0.27
SYNE3-201ENST00000334258 TTPALQ9BTX7 342 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 TAS2R9Q9NYW1 312 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 CHD7Q9P2D1 2997 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 SLC28A1O00337 649 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 STSP08842 583 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 BCKDHAP12694 445 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 GRK5P34947 590 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 CRYBB1P53674 252 aaPredicted RBP13.35□□□□□ -0.27
SYNE3-201ENST00000334258 SERINC3Q13530 473 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 PTPRRQ15256 657 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 SMU1Q2TAY7 513 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 INO80DQ53TQ3 878 aaPredicted RBP13.35□□□□□ -0.27
SYNE3-201ENST00000334258 FAM171A1Q5VUB5 890 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 PTRHD1Q6GMV3 140 aaKnown RBP13.35□□□□□ -0.27
SYNE3-201ENST00000334258 FAM171BQ6P995 826 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 ADAMTSL2Q86TH1 951 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 ENTHD1Q8IYW4 607 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 CDC26Q8NHZ8 85 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 CAPNS2Q96L46 248 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 SNX18Q96RF0 628 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 C12orf4Q9NQ89 552 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 FAM105AQ9NUU6 356 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 FNIP2Q9P278 1114 aa13.35□□□□□ -0.27
SYNE3-201ENST00000334258 AGO1Q9UL18 857 aaKnown RBP13.35□□□□□ -0.27
SYNE3-201ENST00000334258 ARL5CA6NH57 179 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 DUSP11O75319 330 aaKnown RBP13.34□□□□□ -0.27
SYNE3-201ENST00000334258 TSPAN9O75954 239 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 CYBAP13498 195 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 LPOP22079 712 aaPredicted RBP13.34□□□□□ -0.27
SYNE3-201ENST00000334258 ZNF140P52738 457 aaPredicted RBP13.34□□□□□ -0.27
SYNE3-201ENST00000334258 ABHD18Q0P651 414 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 LRRC26Q2I0M4 334 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 CTSL3PQ5NE16 218 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 ZNF517Q6ZMY9 492 aaPredicted RBP13.34□□□□□ -0.27
SYNE3-201ENST00000334258 OR52E4Q8NGH9 312 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 GPR152Q8TDT2 470 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 CPPED1Q9BRF8 314 aaPredicted RBP13.34□□□□□ -0.27
SYNE3-201ENST00000334258 CLMPQ9H6B4 373 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 FKBP14Q9NWM8 211 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 FBXL12Q9NXK8 326 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 GPR83Q9NYM4 423 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 PADI3Q9ULW8 664 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 TLR6Q9Y2C9 796 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 PCDHGC4Q9Y5F7 938 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 LYVE1Q9Y5Y7 322 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 CEP290O15078 2479 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 ITGB1P05556 798 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 FAM189BP81408 668 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 SP3Q02447 781 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 STK11Q15831 433 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 TBRG1Q3YBR2 411 aa13.34□□□□□ -0.27
SYNE3-201ENST00000334258 PDE12Q6L8Q7 609 aaKnown RBP13.34□□□□□ -0.27
SYNE3-201ENST00000334258 RAB43Q86YS6 212 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms