RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 MOCS3O95396 460 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 GBAP04062 536 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 RPN1P04843 607 aaKnown RBP3□□□□□ -1.93
HMGB1-201ENST00000326004 GPIP06744 558 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 VIMP08670 466 aaKnown RBP3□□□□□ -1.93
HMGB1-201ENST00000326004 CD48P09326 243 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 VDRP11473 427 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 GNB3P16520 340 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 EPORP19235 508 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 HOXC13P31276 330 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 RGS7P49802 495 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 MFAP3P55082 362 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 GNB1P62873 340 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 ROR1Q01973 937 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 PPARDQ03181 441 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 SCN1BQ07699 218 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 SCARB2Q14108 478 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 CDO1Q16878 200 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 TMEM30BQ3MIR4 351 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 XKR3Q5GH77 459 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 LRRC73Q5JTD7 316 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 HECTD3Q5T447 861 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 LCN1P1Q5VSP4 162 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 FAM91A1Q658Y4 838 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 ZNF790Q6PG37 636 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 PSRC1Q6PGN9 363 aaPredicted RBP3□□□□□ -1.93
HMGB1-201ENST00000326004 C15orf39Q6ZRI6 1047 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 SPATA21Q7Z572 469 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 SPATA19Q7Z5L4 167 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 PHLDB2Q86SQ0 1253 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 AMIGO1Q86WK6 493 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 LSMEM2Q8N112 164 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 ZNF843Q8N446 348 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 ANKRD13CQ8N6S4 541 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 OR4C3Q8NH37 302 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 SEPT1Q8WYJ6 367 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 NSMAFQ92636 917 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 RAD54LQ92698 747 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 PGM2Q96G03 612 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 LRR1Q96L50 414 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 MAP3K3Q99759 626 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 FSD1Q9BTV5 496 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 RBM4Q9BWF3 364 aaKnown RBP3□□□□□ -1.93
HMGB1-201ENST00000326004 RSPH9Q9H1X1 276 aaPredicted RBP3□□□□□ -1.93
HMGB1-201ENST00000326004 VPS33BQ9H267 617 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 ACTL8Q9H568 366 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 PPANQ9NQ55 473 aaKnown RBP3□□□□□ -1.93
HMGB1-201ENST00000326004 ZNF71Q9NQZ8 489 aaPredicted RBP3□□□□□ -1.93
HMGB1-201ENST00000326004 CHCHD3Q9NX63 227 aaKnown RBP3□□□□□ -1.93
HMGB1-201ENST00000326004 OR6C2Q9NZP2 312 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 TNNQ9UQP3 1299 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 CHKBQ9Y259 395 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 CFTRP13569 1480 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 A0A1W2PPW3 197 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 C2CD4DB7Z1M9 353 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 HHLA1C9JL84 531 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 EPHB6O15197 1021 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 GRID2O43424 1007 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 CDC123O75794 336 aaPredicted RBP2.99□□□□□ -1.93
HMGB1-201ENST00000326004 KRT33AO76009 404 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 PGLSO95336 258 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 PAK4O96013 591 aaPredicted RBP2.99□□□□□ -1.93
HMGB1-201ENST00000326004 HMBSP08397 361 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 SPP1P10451 314 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 CEACAM1P13688 526 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 GLULP15104 373 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 TCF4P15884 667 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 CASTP20810 708 aaKnown RBP2.99□□□□□ -1.93
HMGB1-201ENST00000326004 MAP2K2P36507 400 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 MTCP1P56278 107 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 HYAL1Q12794 435 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 TRAP1Q12931 704 aaKnown RBP2.99□□□□□ -1.93
HMGB1-201ENST00000326004 ITGA9Q13797 1035 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 RBM39Q14498 530 aaKnown RBP2.99□□□□□ -1.93
HMGB1-201ENST00000326004 SQLEQ14534 574 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 LACTB2Q53H82 288 aaPredicted RBP2.99□□□□□ -1.93
HMGB1-201ENST00000326004 UGT3A1Q6NUS8 523 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 CAVIN1Q6NZI2 390 aaKnown RBP2.99□□□□□ -1.93
HMGB1-201ENST00000326004 ARHGAP11AQ6P4F7 1023 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 NOTUMQ6P988 496 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 MSANTD1Q6ZTZ1 278 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 IL17RELQ6ZVW7 336 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 NRARPQ7Z6K4 114 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 GLRX5Q86SX6 157 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 DZIP1Q86YF9 867 aaKnown RBP2.99□□□□□ -1.93
HMGB1-201ENST00000326004 FAM219AQ8IW50 185 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 C4orf19Q8IY42 314 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 KBTBD8Q8NFY9 601 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 OR2T11Q8NH01 316 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 OCC1Q8TAD7 63 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 TSACCQ96A04 125 aaPredicted RBP2.99□□□□□ -1.93
HMGB1-201ENST00000326004 THUMPD3Q9BV44 507 aaKnown RBP2.99□□□□□ -1.93
HMGB1-201ENST00000326004 BARHL1Q9BZE3 327 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 ZNF696Q9H7X3 374 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 INTS10Q9NVR2 710 aaKnown RBP2.99□□□□□ -1.93
HMGB1-201ENST00000326004 GTF3C4Q9UKN8 822 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 POMT1Q9Y6A1 747 aa2.99□□□□□ -1.93
HMGB1-201ENST00000326004 TARBP1Q13395 1621 aaKnown RBP2.99□□□□□ -1.93
HMGB1-201ENST00000326004 PRG4Q92954 1404 aaPredicted RBP2.99□□□□□ -1.93
HMGB1-201ENST00000326004 MROH2BQ7Z745 1585 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms