RNA–Protein interactions for RNA: ENST00000322213.8

SMC1A-201, Transcript of structural maintenance of chromosomes 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC1A, Length 9,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-201ENST00000322213 MC2RQ01718 297 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 SRSF11Q05519 484 aaKnown RBP6.89□□□□□ -1.31
SMC1A-201ENST00000322213 NFIXQ14938 502 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 MPP7Q5T2T1 576 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 RPTNQ6XPR3 784 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 ASB18Q6ZVZ8 466 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 ESX1Q8N693 406 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 OSTF1Q92882 214 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 PPCDCQ96CD2 204 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 CDCA5Q96FF9 252 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 AGO3Q9H9G7 860 aaKnown RBP6.89□□□□□ -1.31
SMC1A-201ENST00000322213 GLTPQ9NZD2 209 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 SLC17A6Q9P2U8 582 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 DCLK1O15075 740 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 POLR1CO15160 346 aaPredicted RBP6.89□□□□□ -1.31
SMC1A-201ENST00000322213 DNASE1P24855 282 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 EIF2S3P41091 472 aaKnown RBP6.89□□□□□ -1.31
SMC1A-201ENST00000322213 POLR2LP62875 67 aaKnown RBP6.89□□□□□ -1.31
SMC1A-201ENST00000322213 SSX2Q16385 188 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 RABL3Q5HYI8 236 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 TRIM48Q8IWZ4 208 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 LILRB1Q8NHL6 650 aaPredicted RBP6.89□□□□□ -1.31
SMC1A-201ENST00000322213 GANCQ8TET4 914 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 GTF3C2Q8WUA4 911 aaPredicted RBP6.89□□□□□ -1.31
SMC1A-201ENST00000322213 C18orf25Q96B23 403 aaPredicted RBP6.89□□□□□ -1.31
SMC1A-201ENST00000322213 MROQ9BYG7 248 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 MIR1-1HGQ9H1L0 117 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 IFT22Q9H7X7 185 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 TIGARQ9NQ88 270 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 PTTG3PQ9NZH4 202 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 ZNF639Q9UID6 485 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 CDH7Q9ULB5 785 aa6.89□□□□□ -1.31
SMC1A-201ENST00000322213 KERAO60938 352 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 CREG1O75629 220 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 SULT1C4O75897 302 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 C4BPAP04003 597 aaKnown RBP6.88□□□□□ -1.31
SMC1A-201ENST00000322213 BMP1P13497 986 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 RAB3BP20337 219 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 CDKN2CP42773 168 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 GUCA1AP43080 201 aaPredicted RBP6.88□□□□□ -1.31
SMC1A-201ENST00000322213 RAB5CP51148 216 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 AFF1P51825 1210 aaKnown RBP6.88□□□□□ -1.31
SMC1A-201ENST00000322213 MANFP55145 182 aaKnown RBP6.88□□□□□ -1.31
SMC1A-201ENST00000322213 TATDN3Q17R31 274 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 LIPKQ5VXJ0 399 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 DHRS4L2Q6PKH6 230 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 SNX20Q7Z614 316 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 CPNE9Q8IYJ1 553 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 ARMC10Q8N2F6 343 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 ZSCAN1Q8NBB4 408 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 AQP11Q8NBQ7 271 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 SLC38A4Q969I6 547 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 FUZQ9BT04 418 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 TUT1Q9H6E5 874 aaKnown RBP6.88□□□□□ -1.31
SMC1A-201ENST00000322213 ARHGEF4Q9NR80 690 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 ZNF214Q9UL59 606 aaPredicted RBP6.88□□□□□ -1.31
SMC1A-201ENST00000322213 RLFQ13129 1914 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 DHRS4L1P0CG22 281 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 HOXD8P13378 290 aaPredicted RBP6.88□□□□□ -1.31
SMC1A-201ENST00000322213 FSHRP23945 695 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 PTPN3P26045 913 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 CEBPGP53567 150 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 SF3B4Q15427 424 aaKnown RBP eCLIP6.88□□□□□ -1.31
SMC1A-201ENST00000322213 IFI44LQ53G44 452 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 NOL9Q5SY16 702 aaKnown RBP6.88□□□□□ -1.31
SMC1A-201ENST00000322213 CGB2Q6NT52 195 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 METTL2BQ6P1Q9 378 aaKnown RBP6.88□□□□□ -1.31
SMC1A-201ENST00000322213 METTL4Q8N3J2 472 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 OR10G2Q8NGC3 310 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 NEIL3Q8TAT5 605 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 TBC1D15Q8TC07 691 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 LRRN4Q8WUT4 740 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 GAL3ST3Q96A11 431 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 ASB4Q9Y574 426 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 PCDHB1Q9Y5F3 818 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 CACNA1GO43497 2377 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 ATE1O95260 518 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 RLN2P04090 185 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 RPLP2P05387 115 aaKnown RBP6.88□□□□□ -1.31
SMC1A-201ENST00000322213 ITGAMP11215 1152 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 CPN2P22792 545 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 CXCR2P25025 360 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 RYKP34925 604 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 MLLT3P42568 568 aaPredicted RBP6.88□□□□□ -1.31
SMC1A-201ENST00000322213 CPT1AP50416 773 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 DGKQP52824 942 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 GNASQ5JWF2 1037 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 ZNF433Q8N7K0 673 aaPredicted RBP6.88□□□□□ -1.31
SMC1A-201ENST00000322213 GPR156Q8NFN8 814 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 STYXQ8WUJ0 223 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 ZBTB45Q96K62 511 aaPredicted RBP6.88□□□□□ -1.31
SMC1A-201ENST00000322213 STARD7Q9NQZ5 370 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 UXTQ9UBK9 157 aaPredicted RBP6.88□□□□□ -1.31
SMC1A-201ENST00000322213 RIMKLBQ9ULI2 386 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 SPTAN1Q13813 2472 aaKnown RBP6.88□□□□□ -1.31
SMC1A-201ENST00000322213 CAP2P40123 477 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 ARCN1P48444 511 aaKnown RBP6.88□□□□□ -1.31
SMC1A-201ENST00000322213 TARDBPQ13148 414 aaKnown RBP eCLIP6.88□□□□□ -1.311e-7■■■■■ 28.6
SMC1A-201ENST00000322213 ZBTB6Q15916 424 aa6.88□□□□□ -1.31
SMC1A-201ENST00000322213 IGSF11Q5DX21 431 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms