RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 SIP14410 1827 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 H3BM21 787 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 SLC28A1O00337 649 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 ELNP15502 786 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 ITIH1P19827 911 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 OR1D2P34982 312 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 CHIT1Q13231 466 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 CAMK2GQ13555 558 aaPredicted RBP11.63□□□□□ -0.55
USHBP1-201ENST00000252597 ARMCX4Q5H9R4 360 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 IER5LQ5T953 404 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 AFMIDQ63HM1 303 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 ADNP2Q6IQ32 1131 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 TRIM48Q8IWZ4 208 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 TSPEARQ8WU66 669 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 ZIC5Q96T25 663 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 TCF25Q9BQ70 676 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 CENPOQ9BU64 300 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 C11orf16Q9NQ32 467 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 TMEM161AQ9NX61 479 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 SIRT5Q9NXA8 310 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 SAMD4AQ9UPU9 718 aaKnown RBP11.63□□□□□ -0.55
USHBP1-201ENST00000252597 DHRS7Q9Y394 339 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 MAP4K5Q9Y4K4 846 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 UNCXA6NJT0 531 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 TMEM88BA6NKF7 163 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 FAM227AF5H4B4 570 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 SMAD6O43541 496 aaKnown RBP11.62□□□□□ -0.55
USHBP1-201ENST00000252597 TSC22D2O75157 780 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 PRR35P0CG20 571 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 AKR1A1P14550 325 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 TYMPP19971 482 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 FCGRTP55899 365 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 ACSM2AQ08AH3 577 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 XKR6Q5GH73 641 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 ACSM2BQ68CK6 577 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 GOLM1Q8NBJ4 401 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 NELL1Q92832 810 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 OTULINQ96BN8 352 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 CD244Q9BZW8 370 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 AKIP1Q9NQ31 210 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 HEBP1Q9NRV9 189 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 DNMT3LQ9UJW3 386 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 LRFN2Q9ULH4 789 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 H3BN98 237 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 TNFRSF11BO00300 401 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 AP3D1O14617 1153 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 RFPL2O75678 378 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 WISP3O95389 354 aaPredicted RBP11.62□□□□□ -0.55
USHBP1-201ENST00000252597 ALOX5P09917 674 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 JUNBP17275 347 aaPredicted RBP11.62□□□□□ -0.55
USHBP1-201ENST00000252597 SMAD3P84022 425 aaKnown RBP11.62□□□□□ -0.55
USHBP1-201ENST00000252597 NPRL3Q12980 569 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 MAD2L1Q13257 205 aaPredicted RBP11.62□□□□□ -0.55
USHBP1-201ENST00000252597 KIAA1614Q5VZ46 1190 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 TRAF7Q6Q0C0 670 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 KLHL17Q6TDP4 642 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 CD300LGQ6UXG3 332 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 RSPO2Q6UXX9 243 aaPredicted RBP11.62□□□□□ -0.55
USHBP1-201ENST00000252597 DPP10Q8N608 796 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 OR9Q2Q8NGE9 314 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 GPR150Q8NGU9 434 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 RNF38Q9H0F5 515 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 SNTG1Q9NSN8 517 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 RAB23Q9ULC3 237 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 BTBD3Q9Y2F9 522 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 PCDHGA3Q9Y5H0 932 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 MIA3Q5JRA6 1907 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 GLYATL1P3A0A0U1RQE8 302 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 MGAT4DA6NG13 374 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 MAGEB17A8MXT2 336 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 ADAM12O43184 909 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 SUV39H1O43463 412 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 GABARAPO95166 117 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 KLKB1P03952 638 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 FHP07954 510 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 KDELR2P33947 212 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 CLCN7P51798 805 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 RACK1P63244 317 aaKnown RBP11.62□□□□□ -0.55
USHBP1-201ENST00000252597 CACNG1Q06432 222 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 BCL2L1Q07817 233 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 TSTQ16762 297 aaKnown RBP11.62□□□□□ -0.55
USHBP1-201ENST00000252597 INO80DQ53TQ3 878 aaPredicted RBP11.62□□□□□ -0.55
USHBP1-201ENST00000252597 LRRC66Q68CR7 880 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 CYP2U1Q7Z449 544 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 GPR65Q8IYL9 337 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 TEX26Q8N6G2 289 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 WDR36Q8NI36 951 aaKnown RBP11.62□□□□□ -0.55
USHBP1-201ENST00000252597 CITED4Q96RK1 184 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 ITPAQ9BY32 194 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 ZNF556Q9HAH1 456 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 NEK6Q9HC98 313 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 RLIMQ9NVW2 624 aa11.62□□□□□ -0.55
USHBP1-201ENST00000252597 NUMA1Q14980 2115 aa11.61□□□□□ -0.55
USHBP1-201ENST00000252597 C2orf78A6NCI8 922 aa11.61□□□□□ -0.55
USHBP1-201ENST00000252597 J3KTA2 159 aa11.61□□□□□ -0.55
USHBP1-201ENST00000252597 HAS3O00219 553 aa11.61□□□□□ -0.55
USHBP1-201ENST00000252597 AREL1O15033 823 aa11.61□□□□□ -0.55
USHBP1-201ENST00000252597 TRBC1P01850 177 aa11.61□□□□□ -0.55
USHBP1-201ENST00000252597 CCDC159P0C7I6 412 aa11.61□□□□□ -0.55
USHBP1-201ENST00000252597 LAMP1P11279 417 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms