RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 STK16O75716 305 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 CDH3P22223 829 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 AKT1P31749 480 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 OPRD1P41143 372 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 MESP2Q0VG99 397 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 BCDIN3DQ7Z5W3 292 aaKnown RBP10.37□□□□□ -0.75
USP28-201ENST00000003302 FAM217AQ8IXS0 508 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 CMTM8Q8IZV2 173 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 CRIPAKQ8N1N5 446 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 CLIP4Q8N3C7 705 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 TRUB1Q8WWH5 349 aaKnown RBP10.37□□□□□ -0.75
USP28-201ENST00000003302 ULK4Q96C45 1275 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 PYURFQ96I23 114 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 NIPSNAP1Q9BPW8 284 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 KLF16Q9BXK1 252 aaPredicted RBP10.37□□□□□ -0.75
USP28-201ENST00000003302 TRIM39Q9HCM9 518 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 SH3BP1Q9Y3L3 701 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 MYO10Q9HD67 2058 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 E7EQ34 232 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 TMEM189-UBE2V1I3L0A0 370 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 RAD51BO15315 384 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 TLE2Q04725 743 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 RGS21Q2M5E4 152 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 ENTHD1Q8IYW4 607 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 ZNF540Q8NDQ6 660 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 DYNC2LI1Q8TCX1 351 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 HSH2DQ96JZ2 352 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 OR4K3Q96R72 315 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 CRLS1Q9UJA2 301 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 PCDHGA4Q9Y5G9 962 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 COL6A3P12111 3177 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 GLYATL1P3A0A0U1RQE8 302 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 GFRA2O00451 464 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 RECQL5O94762 991 aaPredicted RBP10.36□□□□□ -0.75
USP28-201ENST00000003302 TGM1P22735 817 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 AOAHP28039 575 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 ZNF385BQ569K4 471 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 EEF1AKMT2Q5JPI9 291 aaKnown RBP10.36□□□□□ -0.75
USP28-201ENST00000003302 OTOP2Q7RTS6 562 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 ZCCHC7Q8N3Z6 543 aaKnown RBP10.36□□□□□ -0.75
USP28-201ENST00000003302 OR5AK3PQ8NH89 298 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 HPS1Q92902 700 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 SLC35B4Q969S0 331 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 ACOT13Q9NPJ3 140 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 TESMINQ9Y4I5 508 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 ZNF99A8MXY4 864 aaPredicted RBP10.36□□□□□ -0.75
USP28-201ENST00000003302 RFXANKO14593 260 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 AP3D1O14617 1153 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 C7P10643 843 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 EPB42P16452 691 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 EIF2B2P49770 351 aaKnown RBP10.36□□□□□ -0.75
USP28-201ENST00000003302 C2orf73Q8N5S3 287 aaPredicted RBP10.36□□□□□ -0.75
USP28-201ENST00000003302 OR9Q2Q8NGE9 314 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 PSMA8Q8TAA3 256 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 SOCS4Q8WXH5 440 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 FAM126AQ9BYI3 521 aaPredicted RBP10.36□□□□□ -0.75
USP28-201ENST00000003302 SCHIP1Q9P0W5 487 aaPredicted RBP10.36□□□□□ -0.75
USP28-201ENST00000003302 ASPMQ8IZT6 3477 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 SYN3O14994 580 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 SGTAO43765 313 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 GABARAPO95166 117 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 SH3BGRP55822 239 aaPredicted RBP10.36□□□□□ -0.75
USP28-201ENST00000003302 FCGRTP55899 365 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 COLEC12Q5KU26 742 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.36□□□□□ -0.75
USP28-201ENST00000003302 KDM4DQ6B0I6 523 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 PAGE2Q7Z2X7 111 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 SNX20Q7Z614 316 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 HS6ST3Q8IZP7 471 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 YIPF6Q96EC8 236 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 RBM4BQ9BQ04 359 aaKnown RBP10.36□□□□□ -0.75
USP28-201ENST00000003302 RBM4Q9BWF3 364 aaKnown RBP10.36□□□□□ -0.75
USP28-201ENST00000003302 ZDHHC4Q9NPG8 344 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 OLA1Q9NTK5 396 aaKnown RBP10.36□□□□□ -0.75
USP28-201ENST00000003302 GPR83Q9NYM4 423 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 RIMKLBQ9ULI2 386 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 EOMESO95936 686 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 C1SP09871 688 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 FEN1P39748 380 aaKnown RBP10.36□□□□□ -0.75
USP28-201ENST00000003302 RPS3AP61247 264 aaKnown RBP10.36□□□□□ -0.75
USP28-201ENST00000003302 RPP38P78345 283 aaKnown RBP10.36□□□□□ -0.75
USP28-201ENST00000003302 LMAN2Q12907 356 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 MPPE1Q53F39 396 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 SLC22A16Q86VW1 577 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 CROCCP3Q8IVE0 287 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 ZZZ3Q8IYH5 903 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 SPATA17Q96L03 361 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 PANX1Q96RD7 426 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 SORBS1Q9BX66 1292 aaKnown RBP10.36□□□□□ -0.75
USP28-201ENST00000003302 OR51E2Q9H255 320 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 DUSP21Q9H596 190 aa10.36□□□□□ -0.75
USP28-201ENST00000003302 CLIC1O00299 241 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 DSCR3O14972 297 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 RGS14O43566 566 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 CHRM5P08912 532 aaPredicted RBP10.35□□□□□ -0.75
USP28-201ENST00000003302 CDH18Q13634 790 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 HKDC1Q2TB90 917 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 FAM26DQ5JW98 314 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 ANKRD13BQ86YJ7 626 aa10.35□□□□□ -0.75
USP28-201ENST00000003302 EID3Q8N140 333 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms