RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 TTC7AQ9ULT0 858 aaPredicted RBP14.31□□□□□ -0.12
SYNE2-228ENST00000639659 MRPS2Q9Y399 296 aaKnown RBP14.31□□□□□ -0.12
SYNE2-228ENST00000639659 PCDHA3Q9Y5H8 950 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 ADGRG4Q8IZF6 3080 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 PDZD2O15018 2839 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 CELSR1Q9NYQ6 3014 aa14.31□□□□□ -0.12
SYNE2-228ENST00000639659 GOLGA6L9A6NEM1 432 aa14.3□□□□□ -0.12
SYNE2-228ENST00000639659 MROH6A6NGR9 719 aa14.3□□□□□ -0.12
SYNE2-228ENST00000639659 IDSB3KWA1 339 aa14.3□□□□□ -0.12
SYNE2-228ENST00000639659 FAM227AF5H4B4 570 aa14.3□□□□□ -0.12
SYNE2-228ENST00000639659 KRT38O76015 456 aa14.3□□□□□ -0.12
SYNE2-228ENST00000639659 WDPCPO95876 746 aa14.3□□□□□ -0.12
SYNE2-228ENST00000639659 CRYABP02511 175 aaKnown RBP14.3□□□□□ -0.12
SYNE2-228ENST00000639659 HEXBP07686 556 aa14.3□□□□□ -0.12
SYNE2-228ENST00000639659 ESRRAP11474 423 aaPredicted RBP14.3□□□□□ -0.12
SYNE2-228ENST00000639659 SOX11P35716 441 aa14.3□□□□□ -0.12
SYNE2-228ENST00000639659 GDF10P55107 478 aa14.3□□□□□ -0.12
SYNE2-228ENST00000639659 CASP6P55212 293 aa14.3□□□□□ -0.12
SYNE2-228ENST00000639659 PRAMEP78395 509 aa14.3□□□□□ -0.12
SYNE2-228ENST00000639659 RBPJQ06330 500 aa14.3□□□□□ -0.12
SYNE2-228ENST00000639659 SEMA3AQ14563 771 aa14.3□□□□□ -0.12
SYNE2-228ENST00000639659 INAQ16352 499 aa14.3□□□□□ -0.12
SYNE2-228ENST00000639659 MUM1Q2TAK8 710 aa14.3□□□□□ -0.12
SYNE2-228ENST00000639659 CCSMST1Q4G0I0 132 aa14.3□□□□□ -0.12
SYNE2-228ENST00000639659 PTRHD1Q6GMV3 140 aaKnown RBP14.3□□□□□ -0.12
SYNE2-228ENST00000639659 HIBCHQ6NVY1 386 aaPredicted RBP14.3□□□□□ -0.12
SYNE2-228ENST00000639659 PRMT9Q6P2P2 845 aa14.3□□□□□ -0.12
SYNE2-228ENST00000639659 AMER2Q8N7J2 671 aa14.3□□□□□ -0.12
SYNE2-228ENST00000639659 OR13J1Q8NGT2 312 aa14.3□□□□□ -0.12
SYNE2-228ENST00000639659 NFS1Q9Y697 457 aa14.3□□□□□ -0.12
SYNE2-228ENST00000639659 PKDREJQ9NTG1 2253 aa14.29□□□□□ -0.12
SYNE2-228ENST00000639659 FITM1A5D6W6 292 aa14.29□□□□□ -0.12
SYNE2-228ENST00000639659 PSMD3O43242 534 aa14.29□□□□□ -0.12
SYNE2-228ENST00000639659 SRPX2O60687 465 aaPredicted RBP14.29□□□□□ -0.12
SYNE2-228ENST00000639659 SERPINA7P05543 415 aa14.29□□□□□ -0.12
SYNE2-228ENST00000639659 ITGAMP11215 1152 aa14.29□□□□□ -0.12
SYNE2-228ENST00000639659 PTPN7P35236 360 aa14.29□□□□□ -0.12
SYNE2-228ENST00000639659 CA7P43166 264 aa14.29□□□□□ -0.12
SYNE2-228ENST00000639659 ZNF33BQ06732 778 aa14.29□□□□□ -0.12
SYNE2-228ENST00000639659 ZNF630Q2M218 657 aaPredicted RBP14.29□□□□□ -0.12
SYNE2-228ENST00000639659 ABHD17BQ5VST6 288 aa14.29□□□□□ -0.12
SYNE2-228ENST00000639659 ATG9BQ674R7 924 aa14.29□□□□□ -0.12
SYNE2-228ENST00000639659 RPTNQ6XPR3 784 aa14.29□□□□□ -0.12
SYNE2-228ENST00000639659 NEK10Q6ZWH5 1172 aa14.29□□□□□ -0.12
SYNE2-228ENST00000639659 LINC00523Q86TU6 105 aa14.29□□□□□ -0.12
SYNE2-228ENST00000639659 KLHDC8BQ8IXV7 354 aa14.29□□□□□ -0.12
SYNE2-228ENST00000639659 OTUD6BQ8N6M0 293 aa14.29□□□□□ -0.12
SYNE2-228ENST00000639659 OR2L3Q8NG85 312 aa14.29□□□□□ -0.12
SYNE2-228ENST00000639659 OR4L1Q8NH43 312 aa14.29□□□□□ -0.12
SYNE2-228ENST00000639659 PSMF1Q92530 271 aa14.29□□□□□ -0.12
SYNE2-228ENST00000639659 ZUFSPQ96AP4 578 aa14.29□□□□□ -0.12
SYNE2-228ENST00000639659 C10orf90Q96M02 699 aa14.29□□□□□ -0.12
SYNE2-228ENST00000639659 ZNF285Q96NJ3 590 aa14.29□□□□□ -0.12
SYNE2-228ENST00000639659 TMEM121Q9BTD3 319 aa14.29□□□□□ -0.12
SYNE2-228ENST00000639659 ABCF3Q9NUQ8 709 aa14.29□□□□□ -0.12
SYNE2-228ENST00000639659 RIC8BQ9NVN3 520 aa14.29□□□□□ -0.12
SYNE2-228ENST00000639659 ANAPC5Q9UJX4 755 aa14.29□□□□□ -0.12
SYNE2-228ENST00000639659 EFR3BQ9Y2G0 817 aa14.29□□□□□ -0.12
SYNE2-228ENST00000639659 R3HDM2Q9Y2K5 976 aaKnown RBP14.29□□□□□ -0.12
SYNE2-228ENST00000639659 CSMD2Q7Z408 3487 aa14.28□□□□□ -0.12
SYNE2-228ENST00000639659 IGHV1-45A0A0A0MS14 117 aa14.28□□□□□ -0.12
SYNE2-228ENST00000639659 TARM1B6A8C7 271 aa14.28□□□□□ -0.12
SYNE2-228ENST00000639659 E7EVH7 732 aa14.28□□□□□ -0.12
SYNE2-228ENST00000639659 GPC4O75487 556 aa14.28□□□□□ -0.12
SYNE2-228ENST00000639659 BMP10O95393 424 aa14.28□□□□□ -0.12
SYNE2-228ENST00000639659 ANXA5P08758 320 aa14.28□□□□□ -0.12
SYNE2-228ENST00000639659 FDXRP22570 491 aa14.28□□□□□ -0.12
SYNE2-228ENST00000639659 PPARGP37231 505 aaPredicted RBP14.28□□□□□ -0.12
SYNE2-228ENST00000639659 ST13P50502 369 aaKnown RBP14.28□□□□□ -0.12
SYNE2-228ENST00000639659 YBX1P67809 324 aaKnown RBP14.28□□□□□ -0.12
SYNE2-228ENST00000639659 CDH17Q12864 832 aa14.28□□□□□ -0.12
SYNE2-228ENST00000639659 TSTD2Q5T7W7 516 aa14.28□□□□□ -0.12
SYNE2-228ENST00000639659 MFSD4BQ5TF39 518 aa14.28□□□□□ -0.12
SYNE2-228ENST00000639659 MTFR2Q6P444 385 aa14.28□□□□□ -0.12
SYNE2-228ENST00000639659 RNF214Q8ND24 703 aa14.28□□□□□ -0.12
SYNE2-228ENST00000639659 ALG3Q92685 438 aa14.28□□□□□ -0.12
SYNE2-228ENST00000639659 HAS2Q92819 552 aa14.28□□□□□ -0.12
SYNE2-228ENST00000639659 RAD51AP1Q96B01 352 aa14.28□□□□□ -0.12
SYNE2-228ENST00000639659 MMABQ96EY8 250 aaPredicted RBP14.28□□□□□ -0.12
SYNE2-228ENST00000639659 MAGED4Q96JG8 741 aa14.28□□□□□ -0.12
SYNE2-228ENST00000639659 ZNF778Q96MU6 729 aa14.28□□□□□ -0.12
SYNE2-228ENST00000639659 ZFYVE21Q9BQ24 234 aa14.28□□□□□ -0.12
SYNE2-228ENST00000639659 CARD6Q9BX69 1037 aa14.28□□□□□ -0.12
SYNE2-228ENST00000639659 TSPAN10Q9H1Z9 355 aaPredicted RBP14.28□□□□□ -0.12
SYNE2-228ENST00000639659 ABI3Q9P2A4 366 aa14.28□□□□□ -0.12
SYNE2-228ENST00000639659 TINAGQ9UJW2 476 aa14.28□□□□□ -0.12
SYNE2-228ENST00000639659 CPAMD8Q8IZJ3 1885 aa14.27□□□□□ -0.12
SYNE2-228ENST00000639659 A8MUI8 341 aa14.27□□□□□ -0.13
SYNE2-228ENST00000639659 H0YGG7 62 aa14.27□□□□□ -0.13
SYNE2-228ENST00000639659 PRPF4O43172 522 aaKnown RBP eCLIP14.27□□□□□ -0.13
SYNE2-228ENST00000639659 PRAMEF2O60811 474 aa14.27□□□□□ -0.13
SYNE2-228ENST00000639659 ZNF189O75820 626 aaPredicted RBP14.27□□□□□ -0.13
SYNE2-228ENST00000639659 AOAHP28039 575 aa14.27□□□□□ -0.13
SYNE2-228ENST00000639659 CMPK1P30085 196 aa14.27□□□□□ -0.13
SYNE2-228ENST00000639659 CYLC1P35663 651 aaPredicted RBP14.27□□□□□ -0.13
SYNE2-228ENST00000639659 ARF3P61204 181 aaPredicted RBP14.27□□□□□ -0.13
SYNE2-228ENST00000639659 FASTKQ14296 549 aaKnown RBP14.27□□□□□ -0.13
SYNE2-228ENST00000639659 C3AR1Q16581 482 aa14.27□□□□□ -0.13
SYNE2-228ENST00000639659 SYT16Q17RD7 645 aa14.27□□□□□ -0.13
SYNE2-228ENST00000639659 ZNF534Q76KX8 674 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms