RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 DTX3Q8N9I9 347 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 SLC22A8Q8TCC7 542 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 PYCR2Q96C36 320 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 ITPKCQ96DU7 683 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 LRIG1Q96JA1 1093 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 LMAN2LQ9H0V9 348 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 WDR41Q9HAD4 459 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 DZANK1Q9NVP4 752 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 PRPF19Q9UMS4 504 aaKnown RBP11.2□□□□□ -0.62
CLN6-217ENST00000636964 PDE10AQ9Y233 779 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 SDK1Q7Z5N4 2213 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 KIF26AQ9ULI4 1882 aaPredicted RBP11.2□□□□□ -0.62
CLN6-217ENST00000636964 ANKRD34BA5PLL1 514 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 SNPHO15079 494 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 CHEK2O96017 543 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 LBPP18428 481 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 ADSLP30566 484 aaPredicted RBP11.2□□□□□ -0.62
CLN6-217ENST00000636964 BLVRAP53004 296 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 STX1BP61266 288 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 PDGFRLQ15198 375 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 RPS6KA2Q15349 733 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 HABP4Q5JVS0 413 aaKnown RBP11.2□□□□□ -0.62
CLN6-217ENST00000636964 IL27RAQ6UWB1 636 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 GPR141Q7Z602 305 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 MILR1Q7Z6M3 343 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 FUNDC1Q8IVP5 155 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 TRAM1L1Q8N609 369 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 LSMEM1Q8N8F7 131 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 FAM47BQ8NA70 645 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 PDPRQ8NCN5 879 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 STON2Q8WXE9 905 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 SUSD6Q92537 303 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 EME1Q96AY2 570 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 CIB1Q99828 191 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 PCDHAC1Q9H158 963 aa11.2□□□□□ -0.62
CLN6-217ENST00000636964 TNPO3Q9Y5L0 923 aaKnown RBP11.2□□□□□ -0.62
CLN6-217ENST00000636964 KRBA1A5PL33 1030 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 CFAP99D6REC4 459 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 WNT9AO14904 365 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 SLC22A2O15244 555 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 KAT7O95251 611 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 IFNA8P32881 189 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 PSMD8P48556 350 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 ABRQ12979 859 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 SGO1Q5FBB7 561 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 RASGEF1AQ8N9B8 481 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 OR7G1Q8NGA0 311 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 BTN2A2Q8WVV5 523 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 ZNF382Q96SR6 550 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 ZSCAN5AQ9BUG6 496 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 ANKRD60Q9BZ19 345 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 CD244Q9BZW8 370 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 TMEM245Q9H330 911 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 SIAEQ9HAT2 523 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 IL1RL2Q9HB29 575 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 SCPEP1Q9HB40 452 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 PNPLA3Q9NST1 481 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 OPTCQ9UBM4 332 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 SOCS2O14508 198 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 TSPAN6O43657 245 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 RECQL5O94762 991 aaPredicted RBP11.19□□□□□ -0.62
CLN6-217ENST00000636964 SNRPB2P08579 225 aaKnown RBP11.19□□□□□ -0.62
CLN6-217ENST00000636964 CKMT2P17540 419 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 GPX3P22352 226 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 PREPP48147 710 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 PTK2BQ14289 1009 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 ELAVL3Q14576 367 aaKnown RBP11.19□□□□□ -0.62
CLN6-217ENST00000636964 ZXDCQ2QGD7 858 aaPredicted RBP11.19□□□□□ -0.62
CLN6-217ENST00000636964 ATAT1Q5SQI0 421 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 GPR107Q5VW38 600 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 CPA6Q8N4T0 437 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 ADAMTS16Q8TE57 1224 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 GLYATL1Q969I3 302 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 MTFMTQ96DP5 389 aaKnown RBP11.19□□□□□ -0.62
CLN6-217ENST00000636964 MED30Q96HR3 178 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 CDCA3Q99618 268 aaPredicted RBP11.19□□□□□ -0.62
CLN6-217ENST00000636964 CCDC85CA6NKD9 419 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 A8MU76 341 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 H3BUI4 141 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 NR5A2O00482 541 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 ADRB3P13945 408 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 MAPK10P53779 464 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 CD83Q01151 205 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 FCHO2Q0JRZ9 810 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 TMEM115Q12893 351 aaPredicted RBP11.19□□□□□ -0.62
CLN6-217ENST00000636964 HERC3Q15034 1050 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 RAB30Q15771 203 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 VPS26BQ4G0F5 336 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 REP15Q6BDI9 236 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 SULT1C3Q6IMI6 304 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 C16orf89Q6UX73 402 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 NUDT8Q8WV74 236 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 TRPV4Q9HBA0 871 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 DYRK4Q9NR20 520 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 FARSBQ9NSD9 589 aaKnown RBP11.19□□□□□ -0.62
CLN6-217ENST00000636964 PCDHGB3Q9Y5G1 929 aa11.19□□□□□ -0.62
CLN6-217ENST00000636964 SNTNA6NMZ2 147 aa11.18□□□□□ -0.62
CLN6-217ENST00000636964 KMOO15229 486 aa11.18□□□□□ -0.62
CLN6-217ENST00000636964 LZTS3O60299 673 aaPredicted RBP11.18□□□□□ -0.62
CLN6-217ENST00000636964 ZNF182P17025 639 aaPredicted RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms