RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 UNC5CO95185 931 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 NME1P15531 152 aaKnown RBP19.41■□□□□ 0.7
CLN3-250ENST00000636839 DDX39BQ13838 428 aaKnown RBP19.41■□□□□ 0.7
CLN3-250ENST00000636839 KRT72Q14CN4 511 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 C6orf136Q5SQH8 315 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 LIPJQ5W064 366 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 FAM91A1Q658Y4 838 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 EFL1Q7Z2Z2 1120 aaKnown RBP19.41■□□□□ 0.7
CLN3-250ENST00000636839 LONP2Q86WA8 852 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 CPSF7Q8N684 471 aaKnown RBP19.41■□□□□ 0.7
CLN3-250ENST00000636839 SELENOMQ8WWX9 145 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 SMPDL3AQ92484 453 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 NSL1Q96IY1 281 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 ACPTQ9BZG2 426 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 GEMIN8Q9NWZ8 242 aaKnown RBP19.41■□□□□ 0.7
CLN3-250ENST00000636839 SPATA7Q9P0W8 599 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 COLEC10Q9Y6Z7 277 aa19.41■□□□□ 0.7
CLN3-250ENST00000636839 A0A1B0GVT2 93 aa19.4■□□□□ 0.7
CLN3-250ENST00000636839 NRP2O60462 931 aa19.4■□□□□ 0.7
CLN3-250ENST00000636839 LBPP18428 481 aa19.4■□□□□ 0.7
CLN3-250ENST00000636839 PEBP1P30086 187 aaKnown RBP19.4■□□□□ 0.7
CLN3-250ENST00000636839 BLKP51451 505 aa19.4■□□□□ 0.7
CLN3-250ENST00000636839 NR6A1Q15406 480 aa19.4■□□□□ 0.7
CLN3-250ENST00000636839 RFTN2Q52LD8 501 aaPredicted RBP19.4■□□□□ 0.7
CLN3-250ENST00000636839 FRG2Q64ET8 278 aa19.4■□□□□ 0.7
CLN3-250ENST00000636839 NXPE4Q6UWF7 544 aa19.4■□□□□ 0.7
CLN3-250ENST00000636839 ZNF761Q86XN6 746 aaPredicted RBP19.4■□□□□ 0.7
CLN3-250ENST00000636839 KIF2BQ8N4N8 673 aa19.4■□□□□ 0.7
CLN3-250ENST00000636839 OR9I1Q8NGQ6 314 aa19.4■□□□□ 0.7
CLN3-250ENST00000636839 LMX1AQ8TE12 382 aa19.4■□□□□ 0.7
CLN3-250ENST00000636839 FRG2BQ96QU4 278 aa19.4■□□□□ 0.7
CLN3-250ENST00000636839 KIR3DX1Q9H7L2 352 aa19.4■□□□□ 0.7
CLN3-250ENST00000636839 SLC40A1Q9NP59 571 aa19.4■□□□□ 0.7
CLN3-250ENST00000636839 HEBP2Q9Y5Z4 205 aa19.4■□□□□ 0.7
CLN3-250ENST00000636839 PCM1Q15154 2024 aa19.4■□□□□ 0.7
CLN3-250ENST00000636839 FRYLO94915 3013 aa19.39■□□□□ 0.7
CLN3-250ENST00000636839 C9JVG2 144 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 KRT6AP02538 564 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 KRT6BP04259 564 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 C1GALT1C1LP0DN25 315 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 PIK3R1P27986 724 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 KRT6CP48668 564 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 SLBPQ14493 270 aaKnown RBP eCLIP19.39■□□□□ 0.69
CLN3-250ENST00000636839 WDR45BQ5MNZ6 344 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 GRHL2Q6ISB3 625 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 LCTLQ6UWM7 567 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 TRIM46Q7Z4K8 759 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 DTWD2Q8NBA8 298 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 WDR20Q8TBZ3 569 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 SLC37A2Q8TED4 501 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 SETD7Q8WTS6 366 aaKnown RBP19.39■□□□□ 0.69
CLN3-250ENST00000636839 NUDT8Q8WV74 236 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 LCN9Q8WX39 176 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 SLC7A6OSQ96CW6 309 aaPredicted RBP19.39■□□□□ 0.69
CLN3-250ENST00000636839 UCKL1Q9NWZ5 548 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 GPRC5BQ9NZH0 403 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 SNX6Q9UNH7 406 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 CAPN7Q9Y6W3 813 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 B4DGG1 531 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 VILLO15195 856 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 HSD17B2P37059 387 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 CASP2P42575 452 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 AFF3P51826 1226 aaKnown RBP19.39■□□□□ 0.69
CLN3-250ENST00000636839 PCDH1Q08174 1060 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 GPR18Q14330 331 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 NAA25Q14CX7 972 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 AP5B1Q2VPB7 878 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 PAOXQ6QHF9 649 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 RIPOR1Q6ZS17 1223 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 OR2A1Q8NGT9 310 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 OR2L8Q8NGY9 312 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 FSCN3Q9NQT6 498 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 CPNE7Q9UBL6 633 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 KLHL20Q9Y2M5 609 aa19.39■□□□□ 0.69
CLN3-250ENST00000636839 IGKV1-8A0A0C4DH67 115 aa19.38■□□□□ 0.69
CLN3-250ENST00000636839 H7BY64 318 aa19.38■□□□□ 0.69
CLN3-250ENST00000636839 BTN3A3O00478 584 aa19.38■□□□□ 0.69
CLN3-250ENST00000636839 YY2O15391 372 aa19.38■□□□□ 0.69
CLN3-250ENST00000636839 UGDHO60701 494 aa19.38■□□□□ 0.69
CLN3-250ENST00000636839 PCNAP12004 261 aa19.38■□□□□ 0.69
CLN3-250ENST00000636839 ATP6AP1LQ52LC2 224 aa19.38■□□□□ 0.69
CLN3-250ENST00000636839 LYSMD4Q5XG99 296 aa19.38■□□□□ 0.69
CLN3-250ENST00000636839 ATG9BQ674R7 924 aa19.38■□□□□ 0.69
CLN3-250ENST00000636839 PMS2CLQ68D20 193 aa19.38■□□□□ 0.69
CLN3-250ENST00000636839 RINLQ6ZS11 566 aa19.38■□□□□ 0.69
CLN3-250ENST00000636839 FNDC5Q8NAU1 212 aa19.38■□□□□ 0.69
CLN3-250ENST00000636839 OR7G3Q8NG95 312 aa19.38■□□□□ 0.69
CLN3-250ENST00000636839 GAB3Q8WWW8 586 aa19.38■□□□□ 0.69
CLN3-250ENST00000636839 NELL1Q92832 810 aa19.38■□□□□ 0.69
CLN3-250ENST00000636839 PRAP1Q96NZ9 151 aa19.38■□□□□ 0.69
CLN3-250ENST00000636839 RIC8BQ9NVN3 520 aa19.38■□□□□ 0.69
CLN3-250ENST00000636839 PRICKLE3O43900 615 aaPredicted RBP19.37■□□□□ 0.69
CLN3-250ENST00000636839 ETHE1O95571 254 aa19.37■□□□□ 0.69
CLN3-250ENST00000636839 ESRRAP11474 423 aaPredicted RBP19.37■□□□□ 0.69
CLN3-250ENST00000636839 SLC2A4P14672 509 aa19.37■□□□□ 0.69
CLN3-250ENST00000636839 BNC1Q01954 994 aa19.37■□□□□ 0.69
CLN3-250ENST00000636839 E2F2Q14209 437 aa19.37■□□□□ 0.69
CLN3-250ENST00000636839 SF1Q15637 639 aaKnown RBP19.37■□□□□ 0.69
CLN3-250ENST00000636839 TBCCQ15814 346 aa19.37■□□□□ 0.69
CLN3-250ENST00000636839 KIF19Q2TAC6 998 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms