RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 ULK4Q96C45 1275 aa13.78□□□□□ -0.2
CLN3-249ENST00000636685 ZNF354BQ96LW1 612 aa13.78□□□□□ -0.2
CLN3-249ENST00000636685 UTP23Q9BRU9 249 aaKnown RBP13.78□□□□□ -0.2
CLN3-249ENST00000636685 TUBB6Q9BUF5 446 aa13.78□□□□□ -0.2
CLN3-249ENST00000636685 VPS37BQ9H9H4 285 aa13.78□□□□□ -0.2
CLN3-249ENST00000636685 TRPC4Q9UBN4 977 aa13.78□□□□□ -0.2
CLN3-249ENST00000636685 ZC3H7BQ9UGR2 993 aaKnown RBP13.78□□□□□ -0.2
CLN3-249ENST00000636685 LIMA1Q9UHB6 759 aaKnown RBP13.78□□□□□ -0.2
CLN3-249ENST00000636685 CIDEBQ9UHD4 219 aa13.78□□□□□ -0.2
CLN3-249ENST00000636685 MYO6Q9UM54 1294 aa13.78□□□□□ -0.2
CLN3-249ENST00000636685 CCL22O00626 93 aa13.77□□□□□ -0.21
CLN3-249ENST00000636685 RASGRF2O14827 1237 aa13.77□□□□□ -0.21
CLN3-249ENST00000636685 PPP1R12AO14974 1030 aaPredicted RBP13.77□□□□□ -0.21
CLN3-249ENST00000636685 MAN1A2O60476 641 aa13.77□□□□□ -0.21
CLN3-249ENST00000636685 AP2A1O95782 977 aa13.77□□□□□ -0.21
CLN3-249ENST00000636685 SKILP12757 684 aa13.77□□□□□ -0.21
CLN3-249ENST00000636685 ZNF24P17028 368 aa13.77□□□□□ -0.21
CLN3-249ENST00000636685 PTGS2P35354 604 aa13.77□□□□□ -0.21
CLN3-249ENST00000636685 DLX5P56178 289 aa13.77□□□□□ -0.21
CLN3-249ENST00000636685 CDC20BQ86Y33 519 aa13.77□□□□□ -0.21
CLN3-249ENST00000636685 TMEM178AQ8NBL3 297 aa13.77□□□□□ -0.21
CLN3-249ENST00000636685 OR13C4Q8NGS5 318 aa13.77□□□□□ -0.21
CLN3-249ENST00000636685 HEXDCQ8WVB3 486 aa13.77□□□□□ -0.21
CLN3-249ENST00000636685 SEC16BQ96JE7 1060 aa13.77□□□□□ -0.21
CLN3-249ENST00000636685 C10orf90Q96M02 699 aa13.77□□□□□ -0.21
CLN3-249ENST00000636685 NPAS2Q99743 824 aa13.77□□□□□ -0.21
CLN3-249ENST00000636685 LUC7LQ9NQ29 371 aaKnown RBP13.77□□□□□ -0.21
CLN3-249ENST00000636685 INTS7Q9NVH2 962 aaKnown RBP13.77□□□□□ -0.21
CLN3-249ENST00000636685 ZDHHC3Q9NYG2 299 aa13.77□□□□□ -0.21
CLN3-249ENST00000636685 GNPTGQ9UJJ9 305 aa13.77□□□□□ -0.21
CLN3-249ENST00000636685 MKL2Q9ULH7 1088 aa13.77□□□□□ -0.21
CLN3-249ENST00000636685 HIVEP2P31629 2446 aa13.76□□□□□ -0.21
CLN3-249ENST00000636685 MPDZO75970 2070 aa13.76□□□□□ -0.21
CLN3-249ENST00000636685 IGLV3-16A0A075B6K0 115 aa13.76□□□□□ -0.21
CLN3-249ENST00000636685 LOC105369274A0A096LPK9 316 aa13.76□□□□□ -0.21
CLN3-249ENST00000636685 IGHV3-20A0A0C4DH32 117 aa13.76□□□□□ -0.21
CLN3-249ENST00000636685 LOC102723532A0A0G2JNH3 316 aa13.76□□□□□ -0.21
CLN3-249ENST00000636685 A0A1B0GTH9 108 aa13.76□□□□□ -0.21
CLN3-249ENST00000636685 C2orf81A6NN90 581 aa13.76□□□□□ -0.21
CLN3-249ENST00000636685 NRP2O60462 931 aa13.76□□□□□ -0.21
CLN3-249ENST00000636685 SEC24DO94855 1032 aaPredicted RBP13.76□□□□□ -0.21
CLN3-249ENST00000636685 EIF2S1P05198 315 aaKnown RBP13.76□□□□□ -0.21
CLN3-249ENST00000636685 SP1P08047 785 aa13.76□□□□□ -0.21
CLN3-249ENST00000636685 PRSS56P0CW18 603 aa13.76□□□□□ -0.21
CLN3-249ENST00000636685 PRKCIP41743 596 aa13.76□□□□□ -0.21
CLN3-249ENST00000636685 KLHL30Q0D2K2 578 aa13.76□□□□□ -0.21
CLN3-249ENST00000636685 SNTB1Q13884 538 aaKnown RBP13.76□□□□□ -0.21
CLN3-249ENST00000636685 TAF1AQ15573 450 aaPredicted RBP13.76□□□□□ -0.21
CLN3-249ENST00000636685 CT47A1Q5JQC4 288 aaPredicted RBP13.76□□□□□ -0.21
CLN3-249ENST00000636685 SLC9A4Q6AI14 798 aa13.76□□□□□ -0.21
CLN3-249ENST00000636685 H3F3CQ6NXT2 135 aa13.76□□□□□ -0.21
CLN3-249ENST00000636685 TMEM205Q6UW68 189 aa13.76□□□□□ -0.21
CLN3-249ENST00000636685 SNX20Q7Z614 316 aa13.76□□□□□ -0.21
CLN3-249ENST00000636685 CAMKMTQ7Z624 323 aa13.76□□□□□ -0.21
CLN3-249ENST00000636685 CRLF3Q8IUI8 442 aa13.76□□□□□ -0.21
CLN3-249ENST00000636685 OR4N4Q8N0Y3 316 aa13.76□□□□□ -0.21
CLN3-249ENST00000636685 CPSF7Q8N684 471 aaKnown RBP13.76□□□□□ -0.21
CLN3-249ENST00000636685 FAM98AQ8NCA5 519 aaKnown RBP13.76□□□□□ -0.21
CLN3-249ENST00000636685 IL17FQ96PD4 163 aa13.76□□□□□ -0.21
CLN3-249ENST00000636685 RASSF1Q9NS23 344 aa13.76□□□□□ -0.21
CLN3-249ENST00000636685 EDARQ9UNE0 448 aa13.76□□□□□ -0.21
CLN3-249ENST00000636685 A0A0J9YVX5 310 aa13.75□□□□□ -0.21
CLN3-249ENST00000636685 APOL1O14791 398 aa13.75□□□□□ -0.21
CLN3-249ENST00000636685 LIN7AO14910 233 aaPredicted RBP13.75□□□□□ -0.21
CLN3-249ENST00000636685 SRPX2O60687 465 aaPredicted RBP13.75□□□□□ -0.21
CLN3-249ENST00000636685 AGTP01019 485 aa13.75□□□□□ -0.21
CLN3-249ENST00000636685 CYP1A2P05177 515 aa13.75□□□□□ -0.21
CLN3-249ENST00000636685 ITGALP20701 1170 aa13.75□□□□□ -0.21
CLN3-249ENST00000636685 HOXC12P31275 282 aa13.75□□□□□ -0.21
CLN3-249ENST00000636685 NUP107P57740 925 aa13.75□□□□□ -0.21
CLN3-249ENST00000636685 OC90Q02509 493 aaPredicted RBP13.75□□□□□ -0.21
CLN3-249ENST00000636685 PMPCAQ10713 525 aa13.75□□□□□ -0.21
CLN3-249ENST00000636685 WASHC5Q12768 1159 aa13.75□□□□□ -0.21
CLN3-249ENST00000636685 SF1Q15637 639 aaKnown RBP13.75□□□□□ -0.21
CLN3-249ENST00000636685 TAZQ16635 292 aa13.75□□□□□ -0.21
CLN3-249ENST00000636685 DEFB113Q30KQ7 82 aa13.75□□□□□ -0.21
CLN3-249ENST00000636685 BTBD16Q32M84 506 aa13.75□□□□□ -0.21
CLN3-249ENST00000636685 SLC25A25Q6KCM7 469 aa13.75□□□□□ -0.21
CLN3-249ENST00000636685 PAMR1Q6UXH9 720 aa13.75□□□□□ -0.21
CLN3-249ENST00000636685 GOT1L1Q8NHS2 421 aaPredicted RBP13.75□□□□□ -0.21
CLN3-249ENST00000636685 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.75□□□□□ -0.21
CLN3-249ENST00000636685 ELMO1Q92556 727 aa13.75□□□□□ -0.21
CLN3-249ENST00000636685 MENTQ9BUN1 341 aa13.75□□□□□ -0.21
CLN3-249ENST00000636685 ZNF395Q9H8N7 513 aaPredicted RBP13.75□□□□□ -0.21
CLN3-249ENST00000636685 KCNK13Q9HB14 408 aa13.75□□□□□ -0.21
CLN3-249ENST00000636685 C14orf105Q9NVL8 296 aa13.75□□□□□ -0.21
CLN3-249ENST00000636685 AIPL1Q9NZN9 384 aa13.75□□□□□ -0.21
CLN3-249ENST00000636685 FAM169AQ9Y6X4 670 aa13.75□□□□□ -0.21
CLN3-249ENST00000636685 MXRA5Q9NR99 2828 aa13.74□□□□□ -0.21
CLN3-249ENST00000636685 ANK3Q12955 4377 aaKnown RBP13.74□□□□□ -0.21
CLN3-249ENST00000636685 NEURL1O76050 574 aa13.74□□□□□ -0.21
CLN3-249ENST00000636685 S1PR4O95977 384 aa13.74□□□□□ -0.21
CLN3-249ENST00000636685 CD9P21926 228 aa13.74□□□□□ -0.21
CLN3-249ENST00000636685 UBE2HP62256 183 aa13.74□□□□□ -0.21
CLN3-249ENST00000636685 MAPKAPK3Q16644 382 aa13.74□□□□□ -0.21
CLN3-249ENST00000636685 MEP1AQ16819 746 aa13.74□□□□□ -0.21
CLN3-249ENST00000636685 SYT16Q17RD7 645 aa13.74□□□□□ -0.21
CLN3-249ENST00000636685 MUM1Q2TAK8 710 aa13.74□□□□□ -0.21
CLN3-249ENST00000636685 CHSY3Q70JA7 882 aa13.74□□□□□ -0.21
CLN3-249ENST00000636685 APTXQ7Z2E3 356 aaKnown RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms