RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 HIST1H2AHQ96KK5 128 aa17.16■□□□□ 0.34
CLN3-247ENST00000636351 OR2A14Q96R47 310 aa17.16■□□□□ 0.34
CLN3-247ENST00000636351 HIST1H2AJQ99878 128 aa17.16■□□□□ 0.34
CLN3-247ENST00000636351 ZPBPQ9BS86 351 aa17.16■□□□□ 0.34
CLN3-247ENST00000636351 H2AFJQ9BTM1 129 aa17.16■□□□□ 0.34
CLN3-247ENST00000636351 EFHD1Q9BUP0 239 aa17.16■□□□□ 0.34
CLN3-247ENST00000636351 TRIM54Q9BYV2 358 aa17.16■□□□□ 0.34
CLN3-247ENST00000636351 UNKQ9C0B0 810 aaKnown RBP17.16■□□□□ 0.34
CLN3-247ENST00000636351 PARVBQ9HBI1 364 aa17.16■□□□□ 0.34
CLN3-247ENST00000636351 C1GALT1Q9NS00 363 aa17.16■□□□□ 0.34
CLN3-247ENST00000636351 ABCF3Q9NUQ8 709 aa17.16■□□□□ 0.34
CLN3-247ENST00000636351 CAMSAP3Q9P1Y5 1249 aaPredicted RBP17.16■□□□□ 0.34
CLN3-247ENST00000636351 CTNNAL1Q9UBT7 734 aa17.16■□□□□ 0.34
CLN3-247ENST00000636351 PDE10AQ9Y233 779 aa17.16■□□□□ 0.34
CLN3-247ENST00000636351 TMEM184BQ9Y519 407 aaPredicted RBP17.16■□□□□ 0.34
CLN3-247ENST00000636351 POLR1CO15160 346 aaPredicted RBP17.15■□□□□ 0.34
CLN3-247ENST00000636351 SLC16A8O95907 504 aa17.15■□□□□ 0.34
CLN3-247ENST00000636351 CCDC166P0CW27 439 aa17.15■□□□□ 0.34
CLN3-247ENST00000636351 NELFEP18615 380 aaKnown RBP17.15■□□□□ 0.34
CLN3-247ENST00000636351 CRABP2P29373 138 aa17.15■□□□□ 0.34
CLN3-247ENST00000636351 RPA3P35244 121 aaPredicted RBP17.15■□□□□ 0.34
CLN3-247ENST00000636351 HSD17B2P37059 387 aa17.15■□□□□ 0.34
CLN3-247ENST00000636351 SH3BP2P78314 561 aa17.15■□□□□ 0.34
CLN3-247ENST00000636351 ABHD18Q0P651 414 aa17.15■□□□□ 0.34
CLN3-247ENST00000636351 FASTKQ14296 549 aaKnown RBP17.15■□□□□ 0.34
CLN3-247ENST00000636351 CSHL1Q14406 222 aa17.15■□□□□ 0.34
CLN3-247ENST00000636351 SLC29A2Q14542 456 aa17.15■□□□□ 0.34
CLN3-247ENST00000636351 KCNAB1Q14722 419 aa17.15■□□□□ 0.34
CLN3-247ENST00000636351 ARHGAP19Q14CB8 494 aa17.15■□□□□ 0.34
CLN3-247ENST00000636351 ZKSCAN8Q15776 578 aaPredicted RBP17.15■□□□□ 0.34
CLN3-247ENST00000636351 CYP2A13Q16696 494 aa17.15■□□□□ 0.34
CLN3-247ENST00000636351 PHKG1Q16816 387 aa17.15■□□□□ 0.34
CLN3-247ENST00000636351 DEFB109BQ30KR1 87 aa17.15■□□□□ 0.34
CLN3-247ENST00000636351 TMTC4Q5T4D3 741 aa17.15■□□□□ 0.34
CLN3-247ENST00000636351 MBOAT1Q6ZNC8 495 aa17.15■□□□□ 0.34
CLN3-247ENST00000636351 TBC1D1Q86TI0 1168 aaPredicted RBP17.15■□□□□ 0.34
CLN3-247ENST00000636351 FAM20CQ8IXL6 584 aa17.15■□□□□ 0.34
CLN3-247ENST00000636351 SPATA6LQ8N4H0 392 aa17.15■□□□□ 0.34
CLN3-247ENST00000636351 SMPDL3AQ92484 453 aa17.15■□□□□ 0.34
CLN3-247ENST00000636351 STARD8Q92502 1023 aa17.15■□□□□ 0.34
CLN3-247ENST00000636351 DLG3Q92796 817 aa17.15■□□□□ 0.34
CLN3-247ENST00000636351 RNF31Q96EP0 1072 aa17.15■□□□□ 0.34
CLN3-247ENST00000636351 SLC41A2Q96JW4 573 aa17.15■□□□□ 0.34
CLN3-247ENST00000636351 ARL15Q9NXU5 204 aa17.15■□□□□ 0.34
CLN3-247ENST00000636351 ANAPC2Q9UJX6 822 aa17.15■□□□□ 0.34
CLN3-247ENST00000636351 CDC7O00311 574 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 KRT38O76015 456 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 DLGAP3O95886 979 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 ENO2P09104 434 aaPredicted RBP17.14■□□□□ 0.33
CLN3-247ENST00000636351 EBLN1P0CF75 366 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 ST6GAL1P15907 406 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 PSMB5P28074 263 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 CASRP41180 1078 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 HSD11B2P80365 405 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 TUBB3Q13509 450 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 TSNQ15631 228 aaKnown RBP17.14■□□□□ 0.33
CLN3-247ENST00000636351 SF1Q15637 639 aaKnown RBP17.14■□□□□ 0.33
CLN3-247ENST00000636351 IGFBP7Q16270 282 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 SLC5A12Q1EHB4 618 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 ATP1A1-AS1Q5TC04 95 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 THEMIS2Q5TEJ8 643 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 WDR93Q6P2C0 686 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 C16orf46Q6P387 395 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 SUSD1Q6UWL2 747 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 ADAMTSL2Q86TH1 951 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 RASGRP3Q8IV61 690 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 C19orf47Q8N9M1 422 aaKnown RBP17.14■□□□□ 0.33
CLN3-247ENST00000636351 PPFIBP2Q8ND30 876 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 HMGCLL1Q8TB92 370 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 PDLIM5Q96HC4 596 aaKnown RBP17.14■□□□□ 0.33
CLN3-247ENST00000636351 CCDC138Q96M89 665 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 OR6C1Q96RD1 312 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 MIPEPQ99797 713 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 CCDC77Q9BR77 488 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 ACAT2Q9BWD1 397 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 PITPNM3Q9BZ71 974 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 DERL2Q9GZP9 239 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 SNX15Q9NRS6 342 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 INTS7Q9NVH2 962 aaKnown RBP17.14■□□□□ 0.33
CLN3-247ENST00000636351 SIDT1Q9NXL6 827 aaKnown RBP17.14■□□□□ 0.33
CLN3-247ENST00000636351 UTP6Q9NYH9 597 aaKnown RBP17.14■□□□□ 0.33
CLN3-247ENST00000636351 SEMA5BQ9P283 1151 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 TLK1Q9UKI8 766 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 IKZF3Q9UKT9 509 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 ANKRD12Q6UB98 2062 aa17.14■□□□□ 0.33
CLN3-247ENST00000636351 WISP3O95389 354 aaPredicted RBP17.13■□□□□ 0.33
CLN3-247ENST00000636351 GUCA1CO95843 209 aa17.13■□□□□ 0.33
CLN3-247ENST00000636351 ERGP11308 486 aa17.13■□□□□ 0.33
CLN3-247ENST00000636351 TCN2P20062 427 aa17.13■□□□□ 0.33
CLN3-247ENST00000636351 CNTFP26441 200 aa17.13■□□□□ 0.33
CLN3-247ENST00000636351 IMPA1P29218 277 aa17.13■□□□□ 0.33
CLN3-247ENST00000636351 TYK2P29597 1187 aa17.13■□□□□ 0.33
CLN3-247ENST00000636351 FOXK1P85037 733 aa17.13■□□□□ 0.33
CLN3-247ENST00000636351 CYB5D1Q6P9G0 228 aa17.13■□□□□ 0.33
CLN3-247ENST00000636351 ZNF480Q8WV37 535 aa17.13■□□□□ 0.33
CLN3-247ENST00000636351 DCAKDQ8WVC6 231 aa17.13■□□□□ 0.33
CLN3-247ENST00000636351 APOBEC4Q8WW27 367 aaKnown RBP17.13■□□□□ 0.33
CLN3-247ENST00000636351 N4BP2L2Q92802 583 aaPredicted RBP17.13■□□□□ 0.33
CLN3-247ENST00000636351 ALKBH8Q96BT7 664 aaKnown RBP17.13■□□□□ 0.33
CLN3-247ENST00000636351 ABHD17AQ96GS6 310 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms