RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 GTF2IRD1Q9UHL9 959 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 PCDHGB3Q9Y5G1 929 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 ZNFX1Q9P2E3 1918 aaKnown RBP10.76□□□□□ -0.69
CLN3-244ENST00000636147 SMIM35A0A1B0GVV1 85 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 PDHXO00330 501 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 CASKO14936 926 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 INSIG1O15503 277 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 GABARAPO95166 117 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 BCKDHAP12694 445 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 RECQLP46063 649 aaPredicted RBP10.76□□□□□ -0.69
CLN3-244ENST00000636147 CPT1AP50416 773 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 ZNF691Q5VV52 312 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 KDELC1Q6UW63 502 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 UBE2R2Q712K3 238 aaPredicted RBP10.76□□□□□ -0.69
CLN3-244ENST00000636147 LYSMD2Q8IV50 215 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 BPIFB1Q8TDL5 484 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 DUS3LQ96G46 650 aaKnown RBP10.76□□□□□ -0.69
CLN3-244ENST00000636147 CTRCQ99895 268 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 C16orf70Q9BSU1 422 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 SLCO3A1Q9UIG8 710 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 CLEC4AQ9UMR7 237 aa10.76□□□□□ -0.69
CLN3-244ENST00000636147 NUMA1Q14980 2115 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 PRR23D1E9PI22 279 aaPredicted RBP10.75□□□□□ -0.69
CLN3-244ENST00000636147 STX16O14662 325 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 TPST2O60704 377 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 SOX14O95416 240 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 ESR1P03372 595 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 FHP07954 510 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 ALPIP09923 528 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 PRR23D2P0DMB1 279 aaPredicted RBP10.75□□□□□ -0.69
CLN3-244ENST00000636147 EPORP19235 508 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 POLR2EP19388 210 aaKnown RBP10.75□□□□□ -0.69
CLN3-244ENST00000636147 CA5AP35218 305 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 GSTM5P46439 218 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 PPM1FP49593 454 aaPredicted RBP10.75□□□□□ -0.69
CLN3-244ENST00000636147 ISL1P61371 349 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 ZXDBP98169 803 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 ZNF33AQ06730 810 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 GRIK2Q13002 908 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 SEMA3AQ14563 771 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 CPTPQ5TA50 214 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 DDI2Q5TDH0 399 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 Q6ZSR9 355 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 NRARPQ7Z6K4 114 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 ADAMTS16Q8TE57 1224 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 SH3KBP1Q96B97 665 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 NECTIN4Q96NY8 510 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 MGLLQ99685 303 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 ACBD6Q9BR61 282 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 SPRTNQ9H040 489 aaPredicted RBP10.75□□□□□ -0.69
CLN3-244ENST00000636147 TM9SF3Q9HD45 589 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 RAD18Q9NS91 495 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 MS4A12Q9NXJ0 267 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 H2AFY2Q9P0M6 372 aaPredicted RBP10.75□□□□□ -0.69
CLN3-244ENST00000636147 ADAMTS5Q9UNA0 930 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 ABCG2Q9UNQ0 655 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 KNL1Q8NG31 2342 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 FAM92AA1XBS5 289 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 LDB2O43679 373 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 SLITRK5O94991 958 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 APOL3O95236 402 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 PTTG1O95997 202 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 IFNA14P01570 189 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 MTHFD2P13995 350 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 TALDO1P37837 337 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 PARP15Q460N3 678 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 ATXN7L2Q5T6C5 722 aaPredicted RBP10.75□□□□□ -0.69
CLN3-244ENST00000636147 AGAP6Q5VW22 663 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 DEF8Q6ZN54 512 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 VASH1Q7L8A9 365 aaPredicted RBP10.75□□□□□ -0.69
CLN3-244ENST00000636147 PIANPQ8IYJ0 282 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 PAPD5Q8NDF8 572 aaKnown RBP10.75□□□□□ -0.69
CLN3-244ENST00000636147 AGAP4Q96P64 663 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 FEVQ99581 238 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 CLEC4MQ9H2X3 399 aaPredicted RBP10.75□□□□□ -0.69
CLN3-244ENST00000636147 CTPS2Q9NRF8 586 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 COL1A2P08123 1366 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 C12orf71A8MTZ7 269 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 TSPAN4O14817 238 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 CDRT1O95170 752 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 KCNE1P15382 129 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 ATF4P18848 351 aaPredicted RBP10.75□□□□□ -0.69
CLN3-244ENST00000636147 KDELR2P33947 212 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 ABRQ12979 859 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 CHIT1Q13231 466 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 PTPRRQ15256 657 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 C5orf22Q49AR2 442 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 C10orf62Q5T681 223 aaPredicted RBP10.75□□□□□ -0.69
CLN3-244ENST00000636147 KIAA0319Q5VV43 1072 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 USP30Q70CQ3 517 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 PRSS48Q7RTY5 328 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 ADCK2Q7Z695 626 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 PLEKHH3Q7Z736 793 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 RBFAQ8N0V3 343 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 C11orf65Q8NCR3 313 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 IGSF8Q969P0 613 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 ART5Q96L15 291 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 COL21A1Q96P44 957 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 NTN4Q9HB63 628 aa10.75□□□□□ -0.69
CLN3-244ENST00000636147 RNF181Q9P0P0 153 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms