RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 FAF2Q96CS3 445 aa13.16□□□□□ -0.3
SNX1-214ENST00000625244 NPAS2Q99743 824 aa13.16□□□□□ -0.3
SNX1-214ENST00000625244 UTP23Q9BRU9 249 aaKnown RBP13.16□□□□□ -0.3
SNX1-214ENST00000625244 THAP2Q9H0W7 228 aa13.16□□□□□ -0.3
SNX1-214ENST00000625244 HACD3Q9P035 362 aa13.16□□□□□ -0.3
SNX1-214ENST00000625244 GNPTGQ9UJJ9 305 aa13.16□□□□□ -0.3
SNX1-214ENST00000625244 ASF1AQ9Y294 204 aa13.16□□□□□ -0.3
SNX1-214ENST00000625244 ARL5AQ9Y689 179 aa13.16□□□□□ -0.3
SNX1-214ENST00000625244 RASGRF2O14827 1237 aa13.15□□□□□ -0.3
SNX1-214ENST00000625244 STX7O15400 261 aaKnown RBP13.15□□□□□ -0.3
SNX1-214ENST00000625244 MAN1A2O60476 641 aa13.15□□□□□ -0.3
SNX1-214ENST00000625244 NEURL1O76050 574 aa13.15□□□□□ -0.3
SNX1-214ENST00000625244 RAF1P04049 648 aa13.15□□□□□ -0.3
SNX1-214ENST00000625244 SP1P08047 785 aa13.15□□□□□ -0.3
SNX1-214ENST00000625244 RALBP11234 206 aa13.15□□□□□ -0.3
SNX1-214ENST00000625244 FBLP22087 321 aaKnown RBP13.15□□□□□ -0.3
SNX1-214ENST00000625244 ACADLP28330 430 aa13.15□□□□□ -0.3
SNX1-214ENST00000625244 GJC1P36383 396 aa13.15□□□□□ -0.3
SNX1-214ENST00000625244 NUP107P57740 925 aa13.15□□□□□ -0.3
SNX1-214ENST00000625244 H3F3CQ6NXT2 135 aa13.15□□□□□ -0.3
SNX1-214ENST00000625244 FIGLAQ6QHK4 219 aa13.15□□□□□ -0.3
SNX1-214ENST00000625244 TMEM205Q6UW68 189 aa13.15□□□□□ -0.3
SNX1-214ENST00000625244 CPNE8Q86YQ8 564 aa13.15□□□□□ -0.3
SNX1-214ENST00000625244 TMTC1Q8IUR5 882 aa13.15□□□□□ -0.3
SNX1-214ENST00000625244 C2orf73Q8N5S3 287 aaPredicted RBP13.15□□□□□ -0.3
SNX1-214ENST00000625244 ZNF354BQ96LW1 612 aa13.15□□□□□ -0.3
SNX1-214ENST00000625244 ZNF830Q96NB3 372 aaPredicted RBP13.15□□□□□ -0.3
SNX1-214ENST00000625244 TUBB6Q9BUF5 446 aa13.15□□□□□ -0.3
SNX1-214ENST00000625244 YIPF2Q9BWQ6 316 aa13.15□□□□□ -0.3
SNX1-214ENST00000625244 TRIM5Q9C035 493 aa13.15□□□□□ -0.3
SNX1-214ENST00000625244 FAM96AQ9H5X1 160 aa13.15□□□□□ -0.3
SNX1-214ENST00000625244 FKBPLQ9UIM3 349 aa13.15□□□□□ -0.3
SNX1-214ENST00000625244 MYO6Q9UM54 1294 aa13.15□□□□□ -0.3
SNX1-214ENST00000625244 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.15□□□□□ -0.3
SNX1-214ENST00000625244 A0A0A6YYK5 440 aaPredicted RBP13.14□□□□□ -0.31
SNX1-214ENST00000625244 IGHV3-20A0A0C4DH32 117 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 AGAP14A8MT82 685 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 CTSVO60911 334 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 GZMAP12544 262 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 XIAPP98170 497 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 TRIM14Q14142 442 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 KEAP1Q14145 624 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 FRMPD2BQ6IN97 320 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 SLC25A25Q6KCM7 469 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 ZNF449Q6P9G9 518 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 ZNF571Q7Z3V5 609 aaPredicted RBP13.14□□□□□ -0.31
SNX1-214ENST00000625244 CRLF3Q8IUI8 442 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 PHC2Q8IXK0 858 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 TBC1D21Q8IYX1 336 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 PLD5Q8N7P1 536 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 LINC01555Q8NAE3 123 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 FAM98AQ8NCA5 519 aaKnown RBP13.14□□□□□ -0.31
SNX1-214ENST00000625244 MYRIPQ8NFW9 859 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 OR5K2Q8NHB8 316 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 COX4I2Q96KJ9 171 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 MRGPRX2Q96LB1 330 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 C10orf90Q96M02 699 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 COPS8Q99627 209 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 RBSNQ9H1K0 784 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 TP63Q9H3D4 680 aaPredicted RBP13.14□□□□□ -0.31
SNX1-214ENST00000625244 CRIM1Q9NZV1 1036 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 TRPC4Q9UBN4 977 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 ZC3H7BQ9UGR2 993 aaKnown RBP13.14□□□□□ -0.31
SNX1-214ENST00000625244 IP6K2Q9UHH9 426 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 FAM153AQ9UHL3 310 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 POLG2Q9UHN1 485 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 CRLS1Q9UJA2 301 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 HEY1Q9Y5J3 304 aa13.14□□□□□ -0.31
SNX1-214ENST00000625244 SONP18583 2426 aaKnown RBP13.14□□□□□ -0.31
SNX1-214ENST00000625244 DNAJC13O75165 2243 aa13.13□□□□□ -0.31
SNX1-214ENST00000625244 LOC105369274A0A096LPK9 316 aa13.13□□□□□ -0.31
SNX1-214ENST00000625244 LOC102723532A0A0G2JNH3 316 aa13.13□□□□□ -0.31
SNX1-214ENST00000625244 DDX3XO00571 662 aaKnown RBP eCLIP13.13□□□□□ -0.31
SNX1-214ENST00000625244 SEC24DO94855 1032 aaPredicted RBP13.13□□□□□ -0.31
SNX1-214ENST00000625244 EPOP01588 193 aa13.13□□□□□ -0.31
SNX1-214ENST00000625244 MYBL1P10243 752 aa13.13□□□□□ -0.31
SNX1-214ENST00000625244 CD68P34810 354 aaPredicted RBP13.13□□□□□ -0.31
SNX1-214ENST00000625244 KIR2DL3P43628 341 aa13.13□□□□□ -0.31
SNX1-214ENST00000625244 PDK2Q15119 407 aa13.13□□□□□ -0.31
SNX1-214ENST00000625244 SLC1A5Q15758 541 aa13.13□□□□□ -0.31
SNX1-214ENST00000625244 MAPKAPK3Q16644 382 aa13.13□□□□□ -0.31
SNX1-214ENST00000625244 TEX44Q53QW1 395 aa13.13□□□□□ -0.31
SNX1-214ENST00000625244 FIGNQ5HY92 759 aa13.13□□□□□ -0.31
SNX1-214ENST00000625244 MICALCLQ6ZW33 695 aa13.13□□□□□ -0.31
SNX1-214ENST00000625244 TAX1BP1Q86VP1 789 aa13.13□□□□□ -0.31
SNX1-214ENST00000625244 OR4N4Q8N0Y3 316 aa13.13□□□□□ -0.31
SNX1-214ENST00000625244 OR4K2Q8NGD2 314 aa13.13□□□□□ -0.31
SNX1-214ENST00000625244 DMRT3Q9NQL9 472 aa13.13□□□□□ -0.31
SNX1-214ENST00000625244 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.13□□□□□ -0.31
SNX1-214ENST00000625244 ANAPC7Q9UJX3 599 aa13.13□□□□□ -0.31
SNX1-214ENST00000625244 SCN2AQ99250 2005 aa13.13□□□□□ -0.31
SNX1-214ENST00000625244 A6NNC1 897 aa13.12□□□□□ -0.31
SNX1-214ENST00000625244 USP27XA6NNY8 438 aa13.12□□□□□ -0.31
SNX1-214ENST00000625244 RNF212BA8MTL3 300 aa13.12□□□□□ -0.31
SNX1-214ENST00000625244 CFAP99D6REC4 459 aa13.12□□□□□ -0.31
SNX1-214ENST00000625244 SRPX2O60687 465 aaPredicted RBP13.12□□□□□ -0.31
SNX1-214ENST00000625244 AP2A1O95782 977 aa13.12□□□□□ -0.31
SNX1-214ENST00000625244 PKLRP30613 574 aa13.12□□□□□ -0.31
SNX1-214ENST00000625244 NKX6-1P78426 367 aaPredicted RBP13.12□□□□□ -0.31
SNX1-214ENST00000625244 PPP2R2BQ00005 443 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms